Gene annotation
| Transcriptome id | Sobic.010G211600.1 |
|---|---|
| Synonym | Sb10g025830 |
| Functional annotation | Up-reguralion under heat (PubMedID : 24916767) gp176, putative, expressed |
| UniProt | C5Z750 |
| Pfam | PF11443 |
| Panther DB | PTHR31373 PTHR31373:SF0 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G13210 : Uncharacterised conserved protein UCP015417, vWA |
|---|---|
| RAP-DB (Rice) | LOC_Os06g44240.1 : gp176, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034736 |
| Brachypodium | KQK16853 , KQK16852 , KQK11816 , KQK11817 |
| Barley | HORVU6Hr1G013080.4 , HORVU6Hr1G013080.1 , HORVU6Hr1G013080.2 , HORVU6Hr1G013080.3 , HORVU5Hr1G079390.2 , HORVU5Hr1G079390.1 , HORVU7Hr1G112960.2 , HORVU7Hr1G112960.3 , HORVU7Hr1G112960.1 , HORVU7Hr1G112970.1 , HORVU3Hr1G117270.1 , HORVU3Hr1G117270.2 , HORVU5Hr1G081560.3 , HORVU5Hr1G081560.2 , HORVU5Hr1G081560.5 , HORVU5Hr1G081560.4 , HORVU5Hr1G079400.3 , HORVU5Hr1G079400.2 , HORVU5Hr1G079400.1 , HORVU6Hr1G029540.1 |
| Wheat | TraesCS5D02G325700 , TraesCS7B02G410900 , TraesCS7D02G490900 , TraesCS7A02G503000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G004900 | transporter family protein, putative, expressed | - |
| 2 | Sobic.003G280200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.008G027600 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 4 | Sobic.008G158100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 5 | Sobic.008G172600 | ATCHX, putative, expressed | - |
| 6 | Sobic.005G177600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 7 | Sobic.003G417700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 8 | Sobic.001G318500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 9 | Sobic.002G139300 | AP2 domain containing protein, expressed | - |
| 10 | Sobic.002G338500 | sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
| 11 | Sobic.005G110454 | - | - |
| 12 | Sobic.010G156500 | expressed protein | - |
| 13 | Sobic.003G364300 | similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 14 | Sobic.003G156200 | cytochrome P450, putative, expressed | - |
| 15 | Sobic.005G110451 | - | - |
| 16 | Sobic.006G158400 | short-chain dehydrogenase/reductase, putative, expressed | K15095: (+)-neomenthol dehydrogenase |
| 17 | Sobic.004G203700 | ubiquitin family protein, putative, expressed | - |
| 18 | Sobic.004G148200 | Cupin domain containing protein, expressed | - |
| 19 | Sobic.001G114900 | - | - |
| 20 | Sobic.004G189500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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