Gene annotation
Transcriptome id Sobic.010G053900.2
Synonym Sb10g004710
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1W0VRJ9
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF104
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G40250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g07100.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a049897 , Zm00025a000669 , Zm00025a042618 , Zm00025a005702 , Zm00025a041642
Brachypodium KQK18828 , KQK18829 , KQJ90087 , PNT69325 , KQK19432 , KQJ98490 , PNT76148 , PNT76149 , PNT76146 , PNT76147 , PNT68208 , PNT68209 , PNT68206 , PNT68207 , KQK23633 , PNT76151 , PNT76150
Barley HORVU4Hr1G080250.1 , HORVU7Hr1G027080.2 , HORVU7Hr1G027080.3 , HORVU7Hr1G027080.1 , HORVU7Hr1G027080.4 , HORVU7Hr1G027060.1 , HORVU7Hr1G027060.2 , HORVU4Hr1G080280.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G023500 expressed protein -
2 Sobic.006G202800 - -
3 Sobic.005G076400 rp3 protein, putative, expressed -
4 Sobic.004G028900 expressed protein -
5 Sobic.001G037400 expressed protein -
6 Sobic.001G285200 protein transport protein-related, putative, expressed -
7 Sobic.001G154300 DNA binding protein, putative, expressed -
8 Sobic.008G039800 rhoGAP domain containing protein, expressed -
9 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
10 Sobic.008G192700 ATMAP70 protein, putative, expressed -
11 Sobic.009G211800 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.002G276600 endoglucanase, putative, expressed -
13 Sobic.002G246000 expressed protein -
14 Sobic.001G066900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsMan06 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
15 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
16 Sobic.002G347900 GDP-fucose protein-O-fucosyltransferase 2, putative, expressed K03691: peptide-O-fucosyltransferase
17 Sobic.008G084401 - -
18 Sobic.005G204700 polygalacturonase, putative, expressed -
19 Sobic.001G026800 polygalacturonase, putative, expressed -
20 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G053900 Sobic010G053900 Sobic001G023500 Sobic001G023500 Sobic010G053900--Sobic001G023500 Sobic006G202800 Sobic006G202800 Sobic010G053900--Sobic006G202800 Sobic005G076400 Sobic005G076400 Sobic010G053900--Sobic005G076400 Sobic004G028900 Sobic004G028900 Sobic010G053900--Sobic004G028900 Sobic001G037400 Sobic001G037400 Sobic010G053900--Sobic001G037400 Sobic001G285200 Sobic001G285200 Sobic010G053900--Sobic001G285200 Sobic001G154300 Sobic001G154300 Sobic010G053900--Sobic001G154300 Sobic008G039800 Sobic008G039800 Sobic010G053900--Sobic008G039800 Sobic006G267500 Sobic006G267500 Sobic010G053900--Sobic006G267500 Sobic004G328300 Sobic004G328300 Sobic001G023500--Sobic004G328300 Sobic001G023500--Sobic001G154300 Sobic001G201000 Sobic001G201000 Sobic001G023500--Sobic001G201000 Sobic005G055600 Sobic005G055600 Sobic001G023500--Sobic005G055600 Sobic010G231600 Sobic010G231600 Sobic001G023500--Sobic010G231600 Sobic002G320600 Sobic002G320600 Sobic001G023500--Sobic002G320600 Sobic003G045700 Sobic003G045700 Sobic001G023500--Sobic003G045700 Sobic003G031700 Sobic003G031700 Sobic001G023500--Sobic003G031700 Sobic001G023500--Sobic001G285200 Sobic008G192700 Sobic008G192700 Sobic006G202800--Sobic008G192700 Sobic010G049300 Sobic010G049300 Sobic006G202800--Sobic010G049300 Sobic004G256900 Sobic004G256900 Sobic006G202800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G202800--Sobic002G172500 Sobic006G202800--Sobic005G076400 Sobic008G148500 Sobic008G148500 Sobic006G202800--Sobic008G148500 Sobic003G184300 Sobic003G184300 Sobic006G202800--Sobic003G184300 Sobic008G084401 Sobic008G084401 Sobic006G202800--Sobic008G084401 Sobic006G202800--Sobic010G053900 Sobic005G076400--Sobic001G285200 Sobic005G076400--Sobic008G192700 Sobic009G052000 Sobic009G052000 Sobic005G076400--Sobic009G052000 Sobic006G083700 Sobic006G083700 Sobic005G076400--Sobic006G083700 Sobic002G393200 Sobic002G393200 Sobic005G076400--Sobic002G393200 Sobic005G076400--Sobic006G267500 Sobic005G076400--Sobic008G148500 Sobic001G399200 Sobic001G399200 Sobic005G076400--Sobic001G399200 Sobic008G022500 Sobic008G022500 Sobic005G076400--Sobic008G022500 Sobic007G116500 Sobic007G116500 Sobic004G028900--Sobic007G116500 Sobic001G196600 Sobic001G196600 Sobic004G028900--Sobic001G196600 Sobic004G028900--Sobic001G023500 Sobic004G028900--Sobic005G055600 Sobic003G098100 Sobic003G098100 Sobic004G028900--Sobic003G098100 Sobic003G409600 Sobic003G409600 Sobic004G028900--Sobic003G409600 Sobic004G341300 Sobic004G341300 Sobic004G028900--Sobic004G341300 Sobic004G028900--Sobic001G285200 Sobic004G017500 Sobic004G017500 Sobic004G028900--Sobic004G017500 Sobic004G243800 Sobic004G243800 Sobic001G037400--Sobic004G243800 Sobic001G037400--Sobic008G039800 Sobic003G277200 Sobic003G277200 Sobic001G037400--Sobic003G277200 Sobic003G419600 Sobic003G419600 Sobic001G037400--Sobic003G419600 Sobic005G110600 Sobic005G110600 Sobic001G037400--Sobic005G110600 Sobic004G288500 Sobic004G288500 Sobic001G037400--Sobic004G288500 Sobic001G196000 Sobic001G196000 Sobic001G037400--Sobic001G196000 Sobic003G006100 Sobic003G006100 Sobic001G037400--Sobic003G006100 Sobic009G211800 Sobic009G211800 Sobic001G037400--Sobic009G211800 Sobic002G419200 Sobic002G419200 Sobic001G285200--Sobic002G419200 Sobic001G285200--Sobic001G201000 Sobic006G272500 Sobic006G272500 Sobic001G285200--Sobic006G272500 Sobic001G285200--Sobic005G055600 Sobic001G285200--Sobic003G277200 Sobic001G285200--Sobic008G192700 Sobic003G338200 Sobic003G338200 Sobic001G285200--Sobic003G338200 Sobic010G211800 Sobic010G211800 Sobic001G285200--Sobic010G211800 Sobic009G175100 Sobic009G175100 Sobic001G285200--Sobic009G175100 Sobic001G381500 Sobic001G381500 Sobic001G154300--Sobic001G381500 Sobic001G154300--Sobic004G328300 Sobic001G361200 Sobic001G361200 Sobic001G154300--Sobic001G361200 Sobic001G154300--Sobic001G023500 Sobic002G192900 Sobic002G192900 Sobic001G154300--Sobic002G192900 Sobic004G306100 Sobic004G306100 Sobic001G154300--Sobic004G306100 Sobic001G248400 Sobic001G248400 Sobic001G154300--Sobic001G248400 Sobic002G308000 Sobic002G308000 Sobic001G154300--Sobic002G308000 Sobic006G127200 Sobic006G127200 Sobic001G154300--Sobic006G127200 Sobic008G039800--Sobic003G277200 Sobic008G039800--Sobic001G037400 Sobic009G242501 Sobic009G242501 Sobic008G039800--Sobic009G242501 Sobic008G039800--Sobic001G285200 Sobic010G216600 Sobic010G216600 Sobic008G039800--Sobic010G216600 Sobic008G039800--Sobic009G211800 Sobic008G096200 Sobic008G096200 Sobic008G039800--Sobic008G096200 Sobic003G013000 Sobic003G013000 Sobic008G039800--Sobic003G013000 Sobic008G039800--Sobic001G196000 Sobic009G061000 Sobic009G061000 Sobic006G267500--Sobic009G061000 Sobic009G206500 Sobic009G206500 Sobic006G267500--Sobic009G206500 Sobic009G212100 Sobic009G212100 Sobic006G267500--Sobic009G212100 Sobic006G254500 Sobic006G254500 Sobic006G267500--Sobic006G254500 Sobic001G437500 Sobic001G437500 Sobic006G267500--Sobic001G437500 Sobic004G315700 Sobic004G315700 Sobic006G267500--Sobic004G315700 Sobic010G090500 Sobic010G090500 Sobic006G267500--Sobic010G090500 Sobic005G204700 Sobic005G204700 Sobic006G267500--Sobic005G204700 Sobic001G296800 Sobic001G296800 Sobic006G267500--Sobic001G296800
Octagon: transcription factors


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