Gene annotation
Transcriptome id Sobic.010G080800.1
Synonym Sb10g007000
Functional annotation zinc finger family protein, putative, expressed
UniProt C5Z6F7
Pfam PF14369 PF13639
Panther DB PTHR22763 PTHR22763:SF39
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G60360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g10800.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042510 , Zm00025a033090 , Zm00025a022236
Brachypodium KQK19044 , KQK01733
Barley -
Wheat TraesCS6A02G330700 , TraesCS6D02G309800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
3 Sobic.001G261460 - -
4 Sobic.002G075600 thaumatin, putative, expressed -
5 Sobic.003G078900 reticulon domain containing protein, putative, expressed -
6 Sobic.002G053900 Cupin domain containing protein, expressed -
7 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
8 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.001G245800 expressed protein -
10 Sobic.005G130600 expressed protein -
11 Sobic.010G138300 DUF617 domain containing protein, expressed -
12 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
13 Sobic.001G307800 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G074500 expressed protein -
16 Sobic.002G311501 - -
17 Sobic.009G221800 reticulon domain containing protein, putative, expressed -
18 Sobic.003G115200 expressed protein -
19 Sobic.001G190500 dirigent, putative, expressed -
20 Sobic.006G102650 - -


Gene co-expression network
sample Sobic010G080800 Sobic010G080800 Sobic001G046800 Sobic001G046800 Sobic010G080800--Sobic001G046800 Sobic010G047600 Sobic010G047600 Sobic010G080800--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic010G080800--Sobic001G261460 Sobic002G075600 Sobic002G075600 Sobic010G080800--Sobic002G075600 Sobic003G078900 Sobic003G078900 Sobic010G080800--Sobic003G078900 Sobic002G053900 Sobic002G053900 Sobic010G080800--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic010G080800--Sobic003G269100 Sobic003G321400 Sobic003G321400 Sobic010G080800--Sobic003G321400 Sobic001G245800 Sobic001G245800 Sobic010G080800--Sobic001G245800 Sobic001G046800--Sobic010G047600 Sobic001G046800--Sobic001G261460 Sobic010G106700 Sobic010G106700 Sobic001G046800--Sobic010G106700 Sobic001G046800--Sobic002G053900 Sobic009G008800 Sobic009G008800 Sobic001G046800--Sobic009G008800 Sobic001G484000 Sobic001G484000 Sobic001G046800--Sobic001G484000 Sobic010G014400 Sobic010G014400 Sobic001G046800--Sobic010G014400 Sobic001G046800--Sobic003G321400 Sobic003G250700 Sobic003G250700 Sobic001G046800--Sobic003G250700 Sobic010G047600--Sobic001G261460 Sobic010G047600--Sobic001G046800 Sobic010G047600--Sobic003G321400 Sobic009G221800 Sobic009G221800 Sobic010G047600--Sobic009G221800 Sobic001G514200 Sobic001G514200 Sobic010G047600--Sobic001G514200 Sobic010G047600--Sobic003G078900 Sobic003G000200 Sobic003G000200 Sobic010G047600--Sobic003G000200 Sobic003G115200 Sobic003G115200 Sobic010G047600--Sobic003G115200 Sobic004G050700 Sobic004G050700 Sobic010G047600--Sobic004G050700 Sobic001G261460--Sobic010G047600 Sobic001G261460--Sobic001G514200 Sobic001G261460--Sobic001G046800 Sobic001G261460--Sobic009G221800 Sobic001G261460--Sobic003G000200 Sobic001G261460--Sobic003G321400 Sobic005G061200 Sobic005G061200 Sobic001G261460--Sobic005G061200 Sobic001G261460--Sobic003G115200 Sobic001G261460--Sobic010G014400 Sobic002G075600--Sobic010G047600 Sobic002G075600--Sobic001G046800 Sobic002G075600--Sobic003G321400 Sobic002G075600--Sobic003G078900 Sobic002G075600--Sobic009G221800 Sobic002G075600--Sobic010G106700 Sobic002G075600--Sobic002G053900 Sobic002G075600--Sobic001G261460 Sobic002G075600--Sobic003G000200 Sobic003G078900--Sobic009G221800 Sobic003G078900--Sobic003G000200 Sobic003G078900--Sobic003G321400 Sobic003G078900--Sobic010G047600 Sobic003G201200 Sobic003G201200 Sobic003G078900--Sobic003G201200 Sobic003G078900--Sobic001G261460 Sobic009G130300 Sobic009G130300 Sobic003G078900--Sobic009G130300 Sobic003G078900--Sobic001G514200 Sobic003G078900--Sobic004G050700 Sobic002G053900--Sobic001G046800 Sobic009G072800 Sobic009G072800 Sobic002G053900--Sobic009G072800 Sobic002G053900--Sobic009G008800 Sobic002G053900--Sobic010G106700 Sobic002G053900--Sobic010G047600 Sobic002G053900--Sobic001G484000 Sobic001G190500 Sobic001G190500 Sobic002G053900--Sobic001G190500 Sobic009G215000 Sobic009G215000 Sobic002G053900--Sobic009G215000 Sobic003G239100 Sobic003G239100 Sobic002G053900--Sobic003G239100 Sobic003G269100--Sobic003G321400 Sobic001G099600 Sobic001G099600 Sobic003G269100--Sobic001G099600 Sobic004G297950 Sobic004G297950 Sobic003G269100--Sobic004G297950 Sobic003G269100--Sobic003G115200 Sobic003G269100--Sobic010G047600 Sobic003G269100--Sobic001G261460 Sobic001G264400 Sobic001G264400 Sobic003G269100--Sobic001G264400 Sobic003G269100--Sobic001G484000 Sobic003G269100--Sobic001G046800 Sobic003G321400--Sobic003G269100 Sobic003G321400--Sobic003G115200 Sobic003G321400--Sobic009G221800 Sobic003G321400--Sobic010G047600 Sobic003G321400--Sobic003G000200 Sobic003G321400--Sobic003G078900 Sobic003G321400--Sobic001G261460 Sobic003G321400--Sobic001G264400 Sobic003G321400--Sobic001G099600 Sobic010G138300 Sobic010G138300 Sobic001G245800--Sobic010G138300 Sobic009G074500 Sobic009G074500 Sobic001G245800--Sobic009G074500 Sobic001G245800--Sobic001G261460 Sobic001G245800--Sobic010G047600 Sobic001G245800--Sobic001G514200 Sobic009G199001 Sobic009G199001 Sobic001G245800--Sobic009G199001 Sobic001G245800--Sobic009G221800 Sobic008G102800 Sobic008G102800 Sobic001G245800--Sobic008G102800 Sobic004G170800 Sobic004G170800 Sobic001G245800--Sobic004G170800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.