Gene annotation
Transcriptome id Sobic.010G170500.2
Synonym
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1W0VTH5
Pfam -
Panther DB PTHR23155:SF638 PTHR23155
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45520 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os11g42100.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G337350 - -
2 Sobic.001G337300 - -
3 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.002G368500 B12D protein, putative, expressed -
5 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
6 Sobic.004G333150 - -
7 Sobic.005G092900 - -
8 Sobic.007G148000 heat shock protein DnaJ, putative, expressed -
9 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
10 Sobic.004G240600 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
11 Sobic.005G011200 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G039700 expressed protein -
13 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
14 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.008G060050 - -
16 Sobic.008G082200 osFTL7 FT-Like7 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
17 Sobic.005G203100 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
18 Sobic.003G252800 hypothetical protein -
19 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
20 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA


Gene co-expression network
sample Sobic010G170500 Sobic010G170500 Sobic001G337350 Sobic001G337350 Sobic010G170500--Sobic001G337350 Sobic001G337300 Sobic001G337300 Sobic010G170500--Sobic001G337300 Sobic009G106800 Sobic009G106800 Sobic010G170500--Sobic009G106800 Sobic002G368500 Sobic002G368500 Sobic010G170500--Sobic002G368500 Sobic001G100700 Sobic001G100700 Sobic010G170500--Sobic001G100700 Sobic004G333150 Sobic004G333150 Sobic010G170500--Sobic004G333150 Sobic005G092900 Sobic005G092900 Sobic010G170500--Sobic005G092900 Sobic007G148000 Sobic007G148000 Sobic010G170500--Sobic007G148000 Sobic004G304300 Sobic004G304300 Sobic010G170500--Sobic004G304300 Sobic001G337350--Sobic010G170500 Sobic001G337350--Sobic001G337300 Sobic002G310500 Sobic002G310500 Sobic001G337350--Sobic002G310500 Sobic005G208100 Sobic005G208100 Sobic001G337350--Sobic005G208100 Sobic001G337350--Sobic007G148000 Sobic001G184000 Sobic001G184000 Sobic001G337350--Sobic001G184000 Sobic004G181800 Sobic004G181800 Sobic001G337350--Sobic004G181800 Sobic008G140300 Sobic008G140300 Sobic001G337350--Sobic008G140300 Sobic001G337350--Sobic004G304300 Sobic001G337300--Sobic008G140300 Sobic008G060050 Sobic008G060050 Sobic001G337300--Sobic008G060050 Sobic001G337300--Sobic007G148000 Sobic007G067350 Sobic007G067350 Sobic001G337300--Sobic007G067350 Sobic001G348700 Sobic001G348700 Sobic001G337300--Sobic001G348700 Sobic001G337300--Sobic010G170500 Sobic001G337300--Sobic004G304300 Sobic006G107200 Sobic006G107200 Sobic001G337300--Sobic006G107200 Sobic004G128400 Sobic004G128400 Sobic001G337300--Sobic004G128400 Sobic001G444400 Sobic001G444400 Sobic009G106800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic009G106800--Sobic010G084400 Sobic009G196400 Sobic009G196400 Sobic009G106800--Sobic009G196400 Sobic009G106800--Sobic001G100700 Sobic004G111800 Sobic004G111800 Sobic009G106800--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic009G106800--Sobic005G213200 Sobic001G243600 Sobic001G243600 Sobic009G106800--Sobic001G243600 Sobic003G252800 Sobic003G252800 Sobic009G106800--Sobic003G252800 Sobic006G153100 Sobic006G153100 Sobic009G106800--Sobic006G153100 Sobic001G503100 Sobic001G503100 Sobic002G368500--Sobic001G503100 Sobic005G011200 Sobic005G011200 Sobic002G368500--Sobic005G011200 Sobic003G317100 Sobic003G317100 Sobic002G368500--Sobic003G317100 Sobic005G051500 Sobic005G051500 Sobic002G368500--Sobic005G051500 Sobic006G099900 Sobic006G099900 Sobic002G368500--Sobic006G099900 Sobic010G052700 Sobic010G052700 Sobic002G368500--Sobic010G052700 Sobic006G084600 Sobic006G084600 Sobic002G368500--Sobic006G084600 Sobic002G368500--Sobic003G252800 Sobic001G365100 Sobic001G365100 Sobic002G368500--Sobic001G365100 Sobic001G100700--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic009G120000 Sobic009G120000 Sobic001G100700--Sobic009G120000 Sobic004G273400 Sobic004G273400 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic004G240600 Sobic004G240600 Sobic004G333150--Sobic004G240600 Sobic004G333150--Sobic010G052700 Sobic003G087300 Sobic003G087300 Sobic004G333150--Sobic003G087300 Sobic004G333150--Sobic009G106800 Sobic005G203100 Sobic005G203100 Sobic004G333150--Sobic005G203100 Sobic004G333150--Sobic004G273400 Sobic002G421800 Sobic002G421800 Sobic004G333150--Sobic002G421800 Sobic004G333150--Sobic009G196400 Sobic004G333150--Sobic001G100700 Sobic004G107700 Sobic004G107700 Sobic005G092900--Sobic004G107700 Sobic009G139400 Sobic009G139400 Sobic005G092900--Sobic009G139400 Sobic004G176600 Sobic004G176600 Sobic005G092900--Sobic004G176600 Sobic005G092900--Sobic001G503100 Sobic006G106800 Sobic006G106800 Sobic005G092900--Sobic006G106800 Sobic009G077800 Sobic009G077800 Sobic005G092900--Sobic009G077800 Sobic001G400700 Sobic001G400700 Sobic005G092900--Sobic001G400700 Sobic001G481400 Sobic001G481400 Sobic005G092900--Sobic001G481400 Sobic002G004900 Sobic002G004900 Sobic005G092900--Sobic002G004900 Sobic007G148000--Sobic005G203100 Sobic003G240600 Sobic003G240600 Sobic007G148000--Sobic003G240600 Sobic007G148000--Sobic002G310500 Sobic007G135201 Sobic007G135201 Sobic007G148000--Sobic007G135201 Sobic003G088500 Sobic003G088500 Sobic007G148000--Sobic003G088500 Sobic008G082200 Sobic008G082200 Sobic007G148000--Sobic008G082200 Sobic003G426100 Sobic003G426100 Sobic007G148000--Sobic003G426100 Sobic007G148000--Sobic001G243600 Sobic010G239300 Sobic010G239300 Sobic007G148000--Sobic010G239300 Sobic007G066932 Sobic007G066932 Sobic004G304300--Sobic007G066932 Sobic004G304300--Sobic003G426100 Sobic002G195400 Sobic002G195400 Sobic004G304300--Sobic002G195400 Sobic003G426000 Sobic003G426000 Sobic004G304300--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic004G304300--Sobic010G102300 Sobic004G304300--Sobic007G067350 Sobic001G319700 Sobic001G319700 Sobic004G304300--Sobic001G319700 Sobic005G101800 Sobic005G101800 Sobic004G304300--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic004G304300--Sobic009G128700
Octagon: transcription factors


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