Gene annotation
Transcriptome id Sobic.004G240600.1
Synonym Sb04g028145
Functional annotation tRNA synthetase, putative, expressed
UniProt A0A194YSK8
Pfam PF00579
Panther DB PTHR11946 PTHR11946:SF75
NCBI CDD KOG2144; Tyrosyl-tRNA synthetase, cytoplasmic
KEGG Orthology K01866; YARS, tyrosyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT2G33840 : Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
RAP-DB (Rice) LOC_Os08g05490.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G190700 - -
2 Sobic.004G333150 - -
3 Sobic.002G139300 AP2 domain containing protein, expressed -
4 Sobic.009G196400 expressed protein -
5 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.001G333400 SCP-like extracellular protein, expressed -
7 Sobic.005G011200 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.008G158100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
10 Sobic.002G421800 Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed -
11 Sobic.010G211600 Up-reguralion under heat(PubMedID : 24916767)@gp176, putative, expressed -
12 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.002G044800 SAM dependent carboxyl methyltransferase, putative, expressed -
14 Sobic.002G004900 transporter family protein, putative, expressed -
15 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.003G087300 nuclease PA3, putative, expressed -
17 Sobic.005G051500 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.009G009600 expressed protein -
19 Sobic.005G224000 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
20 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -


Gene co-expression network
sample Sobic004G240600 Sobic004G240600 Sobic006G190700 Sobic006G190700 Sobic004G240600--Sobic006G190700 Sobic004G333150 Sobic004G333150 Sobic004G240600--Sobic004G333150 Sobic002G139300 Sobic002G139300 Sobic004G240600--Sobic002G139300 Sobic009G196400 Sobic009G196400 Sobic004G240600--Sobic009G196400 Sobic010G052700 Sobic010G052700 Sobic004G240600--Sobic010G052700 Sobic001G333400 Sobic001G333400 Sobic004G240600--Sobic001G333400 Sobic005G011200 Sobic005G011200 Sobic004G240600--Sobic005G011200 Sobic009G106800 Sobic009G106800 Sobic004G240600--Sobic009G106800 Sobic008G158100 Sobic008G158100 Sobic004G240600--Sobic008G158100 Sobic006G190700--Sobic004G240600 Sobic006G190700--Sobic002G139300 Sobic006G190700--Sobic010G052700 Sobic006G214600 Sobic006G214600 Sobic006G190700--Sobic006G214600 Sobic006G190700--Sobic004G333150 Sobic006G190700--Sobic001G333400 Sobic006G190700--Sobic005G011200 Sobic003G280200 Sobic003G280200 Sobic006G190700--Sobic003G280200 Sobic006G190700--Sobic008G158100 Sobic004G333150--Sobic004G240600 Sobic004G333150--Sobic010G052700 Sobic003G087300 Sobic003G087300 Sobic004G333150--Sobic003G087300 Sobic004G333150--Sobic009G106800 Sobic005G203100 Sobic005G203100 Sobic004G333150--Sobic005G203100 Sobic004G273400 Sobic004G273400 Sobic004G333150--Sobic004G273400 Sobic002G421800 Sobic002G421800 Sobic004G333150--Sobic002G421800 Sobic004G333150--Sobic009G196400 Sobic001G100700 Sobic001G100700 Sobic004G333150--Sobic001G100700 Sobic002G139300--Sobic009G196400 Sobic002G139300--Sobic008G158100 Sobic002G139300--Sobic004G240600 Sobic002G139300--Sobic003G280200 Sobic001G444400 Sobic001G444400 Sobic002G139300--Sobic001G444400 Sobic002G139300--Sobic001G333400 Sobic004G189500 Sobic004G189500 Sobic002G139300--Sobic004G189500 Sobic002G139300--Sobic010G052700 Sobic004G148200 Sobic004G148200 Sobic002G139300--Sobic004G148200 Sobic009G196400--Sobic001G444400 Sobic009G196400--Sobic002G139300 Sobic006G153100 Sobic006G153100 Sobic009G196400--Sobic006G153100 Sobic009G196400--Sobic002G421800 Sobic009G196400--Sobic001G333400 Sobic009G196400--Sobic009G106800 Sobic009G196400--Sobic004G240600 Sobic009G196400--Sobic003G087300 Sobic007G141500 Sobic007G141500 Sobic009G196400--Sobic007G141500 Sobic001G503100 Sobic001G503100 Sobic010G052700--Sobic001G503100 Sobic010G052700--Sobic003G087300 Sobic010G052700--Sobic001G333400 Sobic010G052700--Sobic003G280200 Sobic010G052700--Sobic007G141500 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic010G052700--Sobic002G004900 Sobic002G125700 Sobic002G125700 Sobic010G052700--Sobic002G125700 Sobic001G333400--Sobic005G011200 Sobic001G333400--Sobic010G052700 Sobic002G247600 Sobic002G247600 Sobic001G333400--Sobic002G247600 Sobic001G333400--Sobic007G141500 Sobic001G333400--Sobic001G503100 Sobic001G333400--Sobic002G004900 Sobic006G125100 Sobic006G125100 Sobic001G333400--Sobic006G125100 Sobic002G336700 Sobic002G336700 Sobic001G333400--Sobic002G336700 Sobic001G187200 Sobic001G187200 Sobic001G333400--Sobic001G187200 Sobic005G011200--Sobic001G333400 Sobic005G051500 Sobic005G051500 Sobic005G011200--Sobic005G051500 Sobic005G011200--Sobic001G187200 Sobic006G268800 Sobic006G268800 Sobic005G011200--Sobic006G268800 Sobic005G011200--Sobic002G004900 Sobic005G011200--Sobic010G052700 Sobic001G400800 Sobic001G400800 Sobic005G011200--Sobic001G400800 Sobic003G252800 Sobic003G252800 Sobic005G011200--Sobic003G252800 Sobic005G011200--Sobic002G336700 Sobic009G106800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic009G106800--Sobic010G084400 Sobic009G106800--Sobic009G196400 Sobic009G106800--Sobic001G100700 Sobic004G111800 Sobic004G111800 Sobic009G106800--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic009G106800--Sobic005G213200 Sobic001G243600 Sobic001G243600 Sobic009G106800--Sobic001G243600 Sobic009G106800--Sobic003G252800 Sobic009G106800--Sobic006G153100 Sobic008G027600 Sobic008G027600 Sobic008G158100--Sobic008G027600 Sobic008G158100--Sobic004G148200 Sobic008G158100--Sobic002G139300 Sobic003G417700 Sobic003G417700 Sobic008G158100--Sobic003G417700 Sobic008G158100--Sobic001G187200 Sobic008G158100--Sobic005G011200 Sobic008G158100--Sobic006G268800 Sobic002G369400 Sobic002G369400 Sobic008G158100--Sobic002G369400 Sobic009G145500 Sobic009G145500 Sobic008G158100--Sobic009G145500
Octagon: transcription factors


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