Gene annotation
Transcriptome id Sobic.010G182700.1
Synonym RAN3, ATRAN3, Sb10g023370
Functional annotation ras-related protein, putative, expressed
UniProt C5Z5K8
Pfam PF00025
Panther DB PTHR24071 PTHR24071:SF5
NCBI CDD KOG0096; GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily
KEGG Orthology K07936; GTP-binding nuclear protein Ran
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G55190 : RAN GTPase 3
RAP-DB (Rice) LOC_Os06g39875.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK17802
Barley HORVU7Hr1G084420.6 , HORVU7Hr1G084420.5 , HORVU7Hr1G084420.3 , HORVU7Hr1G084420.2 , HORVU7Hr1G084420.1 , HORVU7Hr1G084420.9 , HORVU7Hr1G084420.8 , HORVU7Hr1G084420.10 , HORVU7Hr1G084420.4
Wheat TraesCS7D02G349900 , TraesCS7B02G254000 , TraesCS7B02G254000
Populus -


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cDNA sequences
Sobic.010G182700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G315600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
2 Sobic.009G183101 - -
3 Sobic.009G099200 VHS and GAT domain containing protein, expressed -
4 Sobic.010G026500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
5 Sobic.009G179600 expressed protein -
6 Sobic.009G000801 - -
7 Sobic.004G259000 fimbrin-like protein 2, putative, expressed -
8 Sobic.010G071600 PTF1, putative, expressed -
9 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
10 Sobic.003G318700 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
11 Sobic.001G174700 L-asparaginase precursor protein, putative, expressed K13051: ASRGL1, L-asparaginase / beta-aspartyl-peptidase
12 Sobic.004G211900 "Significantly enhanced the expression levels by drought stress, up-regulated by silicon application under drought stress "(PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
13 Sobic.002G419000 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
14 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
15 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
16 Sobic.001G112000 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
17 Sobic.002G346400 transmembrane protein 49, putative, expressed -
18 Sobic.010G077100 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
19 Sobic.002G014200 OsFBX209 - F-box domain containing protein, expressed -
20 Sobic.004G211866 - -


Gene co-expression network
sample Sobic010G182700 Sobic010G182700 Sobic004G315600 Sobic004G315600 Sobic010G182700--Sobic004G315600 Sobic009G183101 Sobic009G183101 Sobic010G182700--Sobic009G183101 Sobic009G099200 Sobic009G099200 Sobic010G182700--Sobic009G099200 Sobic010G026500 Sobic010G026500 Sobic010G182700--Sobic010G026500 Sobic009G179600 Sobic009G179600 Sobic010G182700--Sobic009G179600 Sobic009G000801 Sobic009G000801 Sobic010G182700--Sobic009G000801 Sobic004G259000 Sobic004G259000 Sobic010G182700--Sobic004G259000 Sobic010G071600 Sobic010G071600 Sobic010G182700--Sobic010G071600 Sobic009G069300 Sobic009G069300 Sobic010G182700--Sobic009G069300 Sobic004G315600--Sobic009G183101 Sobic004G315600--Sobic010G026500 Sobic009G231200 Sobic009G231200 Sobic004G315600--Sobic009G231200 Sobic001G523200 Sobic001G523200 Sobic004G315600--Sobic001G523200 Sobic010G260300 Sobic010G260300 Sobic004G315600--Sobic010G260300 Sobic004G315600--Sobic010G182700 Sobic001G426800 Sobic001G426800 Sobic004G315600--Sobic001G426800 Sobic009G195800 Sobic009G195800 Sobic004G315600--Sobic009G195800 Sobic003G397500 Sobic003G397500 Sobic004G315600--Sobic003G397500 Sobic009G183101--Sobic001G426800 Sobic009G183101--Sobic009G069300 Sobic004G276200 Sobic004G276200 Sobic009G183101--Sobic004G276200 Sobic009G183101--Sobic004G315600 Sobic002G417300 Sobic002G417300 Sobic009G183101--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic009G183101--Sobic003G339700 Sobic004G323400 Sobic004G323400 Sobic009G183101--Sobic004G323400 Sobic009G183101--Sobic009G195800 Sobic010G090301 Sobic010G090301 Sobic009G183101--Sobic010G090301 Sobic007G180600 Sobic007G180600 Sobic009G099200--Sobic007G180600 Sobic010G169900 Sobic010G169900 Sobic009G099200--Sobic010G169900 Sobic004G124500 Sobic004G124500 Sobic009G099200--Sobic004G124500 Sobic006G101800 Sobic006G101800 Sobic009G099200--Sobic006G101800 Sobic003G302200 Sobic003G302200 Sobic009G099200--Sobic003G302200 Sobic006G210700 Sobic006G210700 Sobic009G099200--Sobic006G210700 Sobic002G313900 Sobic002G313900 Sobic009G099200--Sobic002G313900 Sobic001G251200 Sobic001G251200 Sobic009G099200--Sobic001G251200 Sobic009G249700 Sobic009G249700 Sobic009G099200--Sobic009G249700 Sobic010G026500--Sobic003G397500 Sobic008G075600 Sobic008G075600 Sobic010G026500--Sobic008G075600 Sobic009G064400 Sobic009G064400 Sobic010G026500--Sobic009G064400 Sobic010G217532 Sobic010G217532 Sobic010G026500--Sobic010G217532 Sobic010G026500--Sobic004G315600 Sobic003G252400 Sobic003G252400 Sobic010G026500--Sobic003G252400 Sobic008G059000 Sobic008G059000 Sobic010G026500--Sobic008G059000 Sobic002G037400 Sobic002G037400 Sobic010G026500--Sobic002G037400 Sobic008G058900 Sobic008G058900 Sobic010G026500--Sobic008G058900 Sobic007G216500 Sobic007G216500 Sobic009G179600--Sobic007G216500 Sobic006G263100 Sobic006G263100 Sobic009G179600--Sobic006G263100 Sobic003G033000 Sobic003G033000 Sobic009G179600--Sobic003G033000 Sobic004G039300 Sobic004G039300 Sobic009G179600--Sobic004G039300 Sobic006G217300 Sobic006G217300 Sobic009G179600--Sobic006G217300 Sobic001G122500 Sobic001G122500 Sobic009G179600--Sobic001G122500 Sobic004G353600 Sobic004G353600 Sobic009G179600--Sobic004G353600 Sobic004G031600 Sobic004G031600 Sobic009G179600--Sobic004G031600 Sobic002G395600 Sobic002G395600 Sobic009G179600--Sobic002G395600 Sobic004G155150 Sobic004G155150 Sobic009G000801--Sobic004G155150 Sobic004G257350 Sobic004G257350 Sobic009G000801--Sobic004G257350 Sobic009G156600 Sobic009G156600 Sobic009G000801--Sobic009G156600 Sobic009G000700 Sobic009G000700 Sobic009G000801--Sobic009G000700 Sobic001G507500 Sobic001G507500 Sobic009G000801--Sobic001G507500 Sobic001G286000 Sobic001G286000 Sobic009G000801--Sobic001G286000 Sobic002G027500 Sobic002G027500 Sobic009G000801--Sobic002G027500 Sobic002G229600 Sobic002G229600 Sobic009G000801--Sobic002G229600 Sobic004G310600 Sobic004G310600 Sobic009G000801--Sobic004G310600 Sobic004G259000--Sobic009G099200 Sobic002G193300 Sobic002G193300 Sobic004G259000--Sobic002G193300 Sobic003G284700 Sobic003G284700 Sobic004G259000--Sobic003G284700 Sobic003G318700 Sobic003G318700 Sobic004G259000--Sobic003G318700 Sobic004G259000--Sobic006G210700 Sobic010G086600 Sobic010G086600 Sobic004G259000--Sobic010G086600 Sobic004G160700 Sobic004G160700 Sobic004G259000--Sobic004G160700 Sobic009G208100 Sobic009G208100 Sobic004G259000--Sobic009G208100 Sobic002G292900 Sobic002G292900 Sobic004G259000--Sobic002G292900 Sobic003G159500 Sobic003G159500 Sobic010G071600--Sobic003G159500 Sobic006G061100 Sobic006G061100 Sobic010G071600--Sobic006G061100 Sobic004G311400 Sobic004G311400 Sobic010G071600--Sobic004G311400 Sobic004G154300 Sobic004G154300 Sobic010G071600--Sobic004G154300 Sobic009G060300 Sobic009G060300 Sobic010G071600--Sobic009G060300 Sobic009G159000 Sobic009G159000 Sobic010G071600--Sobic009G159000 Sobic003G358200 Sobic003G358200 Sobic010G071600--Sobic003G358200 Sobic001G534600 Sobic001G534600 Sobic010G071600--Sobic001G534600 Sobic009G132650 Sobic009G132650 Sobic010G071600--Sobic009G132650 Sobic009G069300--Sobic009G183101 Sobic009G069300--Sobic001G426800 Sobic009G069300--Sobic003G339700 Sobic009G069300--Sobic002G417300 Sobic009G069300--Sobic004G276200 Sobic003G425500 Sobic003G425500 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic002G368700 Sobic002G368700 Sobic009G069300--Sobic002G368700 Sobic006G150400 Sobic006G150400 Sobic009G069300--Sobic006G150400
Octagon: transcription factors


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