Gene annotation
Transcriptome id Sobic.010G219500.2
Synonym FKBP13, ATFKBP13, Sb10g026520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
UniProt A0A1W0VUA2
Pfam PF00254
Panther DB PTHR10516 PTHR10516:SF302
NCBI CDD KOG0544; FKBP-type peptidyl-prolyl cis-trans isomerase
KEGG Orthology K01802; peptidylprolyl isomerase
Gene Ontology GO:0006457; protein folding


Orthologs (automatic annotation)
TAIR AT5G45680 : FK506-binding protein 13
RAP-DB (Rice) LOC_Os06g45340.1 : peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
MaizeGDB (Corn) Zm00025a022118 , Zm00025a051731
Brachypodium KQK16987
Barley HORVU6Hr1G075080.5 , HORVU6Hr1G075080.4 , HORVU6Hr1G075080.7 , HORVU6Hr1G075080.1 , HORVU6Hr1G075080.2 , HORVU6Hr1G075080.3 , HORVU7Hr1G109380.2 , HORVU7Hr1G109380.3 , HORVU7Hr1G109380.1 , HORVU7Hr1G109380.6 , HORVU7Hr1G109380.4 , HORVU7Hr1G109380.5
Wheat TraesCS7D02G472600 , TraesCS6A02G302500 , TraesCS6B02G331700 , TraesCS7B02G388800 , TraesCS6D02G282000 , TraesCS7A02G485300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
2 Sobic.002G306201 - -
3 Sobic.009G098100 T-complex protein, putative, expressed -
4 Sobic.004G253800 - -
5 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
6 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
8 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
9 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
11 Sobic.004G019300 terpene synthase, putative, expressed K15086: (3S)-linalool synthase
12 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
13 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
14 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
15 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
16 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
17 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G187100 expressed protein -
19 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
20 Sobic.002G251400 expressed protein -


Gene co-expression network
sample Sobic010G219500 Sobic010G219500 Sobic003G295800 Sobic003G295800 Sobic010G219500--Sobic003G295800 Sobic002G306201 Sobic002G306201 Sobic010G219500--Sobic002G306201 Sobic009G098100 Sobic009G098100 Sobic010G219500--Sobic009G098100 Sobic004G253800 Sobic004G253800 Sobic010G219500--Sobic004G253800 Sobic007G171800 Sobic007G171800 Sobic010G219500--Sobic007G171800 Sobic009G001500 Sobic009G001500 Sobic010G219500--Sobic009G001500 Sobic004G191200 Sobic004G191200 Sobic010G219500--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic010G219500--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic010G219500--Sobic007G034500 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic002G306201--Sobic010G219500 Sobic002G306201--Sobic009G098100 Sobic002G306201--Sobic003G295800 Sobic001G069500 Sobic001G069500 Sobic002G306201--Sobic001G069500 Sobic002G306201--Sobic007G171800 Sobic001G188600 Sobic001G188600 Sobic002G306201--Sobic001G188600 Sobic002G306201--Sobic008G030000 Sobic002G306201--Sobic004G253800 Sobic010G215500 Sobic010G215500 Sobic002G306201--Sobic010G215500 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic001G383900 Sobic001G383900 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100 Sobic005G200600 Sobic005G200600 Sobic004G253800--Sobic005G200600 Sobic003G157500 Sobic003G157500 Sobic004G253800--Sobic003G157500 Sobic005G020200 Sobic005G020200 Sobic004G253800--Sobic005G020200 Sobic004G253800--Sobic001G188600 Sobic006G025700 Sobic006G025700 Sobic004G253800--Sobic006G025700 Sobic009G059100 Sobic009G059100 Sobic004G253800--Sobic009G059100 Sobic004G253800--Sobic009G001500 Sobic001G357200 Sobic001G357200 Sobic004G253800--Sobic001G357200 Sobic006G114300 Sobic006G114300 Sobic004G253800--Sobic006G114300 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic004G191200--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic004G191200--Sobic007G034500 Sobic003G246400 Sobic003G246400 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic008G030000--Sobic003G295800 Sobic008G030000--Sobic009G098100 Sobic008G030000--Sobic009G001500 Sobic008G030000--Sobic003G383600 Sobic008G030000--Sobic001G453300 Sobic008G030000--Sobic001G357200 Sobic007G185100 Sobic007G185100 Sobic008G030000--Sobic007G185100 Sobic008G030000--Sobic001G383900 Sobic008G030000--Sobic007G013400 Sobic007G034500--Sobic007G171800 Sobic007G034500--Sobic004G044000 Sobic007G034500--Sobic006G280050 Sobic007G034500--Sobic004G191200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic007G034500--Sobic001G191000 Sobic007G034500--Sobic001G027600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.