Gene annotation
Transcriptome id Sobic.010G267200.1
Synonym Sb10g030220
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WD40-like Beta Propeller Repeat family protein, expressed
UniProt C5Z1W2
Pfam PF07676
Panther DB PTHR32161 PTHR32161:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21680 : DPP6 N-terminal domain-like protein
RAP-DB (Rice) LOC_Os03g28980.1 : WD40-like Beta Propeller Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a055444
Brachypodium PNT68080 , PNT68081
Barley HORVU5Hr1G001250.1 , HORVU5Hr1G001250.3 , HORVU5Hr1G001250.2 , HORVU7Hr1G001020.27 , HORVU7Hr1G001020.26 , HORVU7Hr1G001020.25 , HORVU7Hr1G001020.24 , HORVU0Hr1G036560.5 , HORVU0Hr1G036560.6 , HORVU0Hr1G036560.2 , HORVU0Hr1G036560.3 , HORVU7Hr1G001020.1 , HORVU7Hr1G001020.2 , HORVU7Hr1G001020.3 , HORVU7Hr1G001020.4 , HORVU7Hr1G001020.5 , HORVU7Hr1G001020.6 , HORVU7Hr1G001020.7 , HORVU7Hr1G001020.8 , HORVU7Hr1G001020.9 , HORVU7Hr1G001020.12 , HORVU7Hr1G001020.13 , HORVU7Hr1G001020.10 , HORVU7Hr1G001020.11 , HORVU7Hr1G001020.17 , HORVU7Hr1G001020.14
Wheat TraesCS7B02G344500 , TraesCS3D02G516400 , TraesCS4A02G484600 , TraesCS4A02G484600 , TraesCS7A02G010400 , TraesCS7A02G010400 , TraesCSU02G061800 , TraesCS5D02G550100 , TraesCS5D02G550100 , TraesCS5B02G009500 , TraesCS6B02G056600 , TraesCS7D02G434600 , TraesCS5D02G016500 , TraesCS5A02G011600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
2 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
4 Sobic.003G319400 receptor protein kinase, putative, expressed -
5 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
9 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.008G191400 expressed protein -
11 Sobic.001G438200 expressed protein -
12 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
13 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
15 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
16 Sobic.004G322100 hypro1, putative, expressed -
17 Sobic.010G031700 thaumatin, putative, expressed -
18 Sobic.003G351600 expressed protein -
19 Sobic.004G306900 amino acid transporter, putative, expressed -
20 Sobic.001G487800 expressed protein -


Gene co-expression network
sample Sobic010G267200 Sobic010G267200 Sobic005G202300 Sobic005G202300 Sobic010G267200--Sobic005G202300 Sobic001G232200 Sobic001G232200 Sobic010G267200--Sobic001G232200 Sobic006G174300 Sobic006G174300 Sobic010G267200--Sobic006G174300 Sobic003G319400 Sobic003G319400 Sobic010G267200--Sobic003G319400 Sobic001G058300 Sobic001G058300 Sobic010G267200--Sobic001G058300 Sobic006G106900 Sobic006G106900 Sobic010G267200--Sobic006G106900 Sobic003G353200 Sobic003G353200 Sobic010G267200--Sobic003G353200 Sobic009G181600 Sobic009G181600 Sobic010G267200--Sobic009G181600 Sobic003G280000 Sobic003G280000 Sobic010G267200--Sobic003G280000 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic003G053200 Sobic003G053200 Sobic005G202300--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic005G202300--Sobic001G058300 Sobic005G166700 Sobic005G166700 Sobic001G232200--Sobic005G166700 Sobic001G487800 Sobic001G487800 Sobic001G232200--Sobic001G487800 Sobic001G232200--Sobic010G267200 Sobic009G150500 Sobic009G150500 Sobic001G232200--Sobic009G150500 Sobic005G224300 Sobic005G224300 Sobic001G232200--Sobic005G224300 Sobic001G232200--Sobic005G202300 Sobic001G232200--Sobic003G353200 Sobic001G232200--Sobic003G280000 Sobic002G228800 Sobic002G228800 Sobic001G232200--Sobic002G228800 Sobic006G277700 Sobic006G277700 Sobic006G174300--Sobic006G277700 Sobic006G174300--Sobic005G202300 Sobic006G174300--Sobic001G058300 Sobic003G053600 Sobic003G053600 Sobic006G174300--Sobic003G053600 Sobic006G174300--Sobic003G319400 Sobic006G174300--Sobic003G353200 Sobic006G174300--Sobic010G031700 Sobic001G379400 Sobic001G379400 Sobic006G174300--Sobic001G379400 Sobic002G377700 Sobic002G377700 Sobic006G174300--Sobic002G377700 Sobic003G319400--Sobic006G106900 Sobic003G319400--Sobic005G202300 Sobic004G306900 Sobic004G306900 Sobic003G319400--Sobic004G306900 Sobic001G438200 Sobic001G438200 Sobic003G319400--Sobic001G438200 Sobic003G319400--Sobic009G181600 Sobic007G086300 Sobic007G086300 Sobic003G319400--Sobic007G086300 Sobic003G282200 Sobic003G282200 Sobic003G319400--Sobic003G282200 Sobic003G064800 Sobic003G064800 Sobic003G319400--Sobic003G064800 Sobic003G319400--Sobic003G280000 Sobic001G238200 Sobic001G238200 Sobic001G058300--Sobic001G238200 Sobic001G058300--Sobic001G438200 Sobic003G140700 Sobic003G140700 Sobic001G058300--Sobic003G140700 Sobic001G058300--Sobic003G319400 Sobic001G058300--Sobic004G306900 Sobic001G058300--Sobic005G202300 Sobic001G058300--Sobic003G282200 Sobic001G058300--Sobic006G106900 Sobic001G058300--Sobic006G174300 Sobic006G106900--Sobic003G319400 Sobic006G106900--Sobic005G202300 Sobic006G106900--Sobic003G064800 Sobic001G414800 Sobic001G414800 Sobic006G106900--Sobic001G414800 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic006G106900--Sobic009G181600 Sobic006G106900--Sobic001G438200 Sobic006G106900--Sobic003G280000 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic002G146000 Sobic002G146000 Sobic003G353200--Sobic002G146000 Sobic003G353200--Sobic010G031700 Sobic003G353200--Sobic005G202300 Sobic003G353200--Sobic003G053600 Sobic003G353200--Sobic006G106900 Sobic001G218400 Sobic001G218400 Sobic003G353200--Sobic001G218400 Sobic009G162300 Sobic009G162300 Sobic003G353200--Sobic009G162300 Sobic009G181600--Sobic006G106900 Sobic009G181600--Sobic003G319400 Sobic009G181600--Sobic005G202300 Sobic006G092700 Sobic006G092700 Sobic009G181600--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic009G181600--Sobic008G164450 Sobic002G343100 Sobic002G343100 Sobic009G181600--Sobic002G343100 Sobic009G181600--Sobic004G029400 Sobic009G181600--Sobic007G037600 Sobic009G181600--Sobic010G031700 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G280000--Sobic003G319400 Sobic003G280000--Sobic010G031700 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic003G280000--Sobic009G181600 Sobic003G280000--Sobic001G218400
Octagon: transcription factors


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