Gene annotation
Transcriptome id Sobic.001G003700.1
Synonym Sb01g000440
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt C5WRW0
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF93
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT4G22790 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g64150.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a009128
Brachypodium -
Barley HORVU5Hr1G124880.2 , HORVU5Hr1G124880.3 , HORVU5Hr1G124880.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G003700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G030000 expressed protein -
2 Sobic.004G340500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX65 - F-box domain containing protein, expressed -
3 Sobic.001G339900 - -
4 Sobic.006G272450 - -
5 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
6 Sobic.002G052500 - -
7 Sobic.006G166300 WRKY36, expressed -
8 Sobic.004G098200 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.007G162500 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
10 Sobic.010G004001 - -
11 Sobic.009G010800 expressed protein -
12 Sobic.004G205200 PPR repeat containing protein, expressed -
13 Sobic.009G070900 - -
14 Sobic.007G085350 - -
15 Sobic.009G194600 expressed protein -
16 Sobic.007G072901 - -
17 Sobic.004G237500 hydrolase, acting on carbon-nitrogen, putative, expressed -
18 Sobic.002G043700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthranilate phosphoribosyltransferase, putative, expressed -
19 Sobic.001G042400 expressed protein -
20 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G003700 Sobic001G003700 Sobic003G030000 Sobic003G030000 Sobic001G003700--Sobic003G030000 Sobic004G340500 Sobic004G340500 Sobic001G003700--Sobic004G340500 Sobic001G339900 Sobic001G339900 Sobic001G003700--Sobic001G339900 Sobic006G272450 Sobic006G272450 Sobic001G003700--Sobic006G272450 Sobic001G063900 Sobic001G063900 Sobic001G003700--Sobic001G063900 Sobic002G052500 Sobic002G052500 Sobic001G003700--Sobic002G052500 Sobic006G166300 Sobic006G166300 Sobic001G003700--Sobic006G166300 Sobic004G098200 Sobic004G098200 Sobic001G003700--Sobic004G098200 Sobic007G162500 Sobic007G162500 Sobic001G003700--Sobic007G162500 Sobic003G030000--Sobic007G162500 Sobic006G016600 Sobic006G016600 Sobic003G030000--Sobic006G016600 Sobic009G171200 Sobic009G171200 Sobic003G030000--Sobic009G171200 Sobic010G018800 Sobic010G018800 Sobic003G030000--Sobic010G018800 Sobic003G432800 Sobic003G432800 Sobic003G030000--Sobic003G432800 Sobic010G256433 Sobic010G256433 Sobic003G030000--Sobic010G256433 Sobic001G135300 Sobic001G135300 Sobic003G030000--Sobic001G135300 Sobic006G112500 Sobic006G112500 Sobic003G030000--Sobic006G112500 Sobic003G030000--Sobic001G003700 Sobic010G076900 Sobic010G076900 Sobic004G340500--Sobic010G076900 Sobic005G036300 Sobic005G036300 Sobic004G340500--Sobic005G036300 Sobic010G078200 Sobic010G078200 Sobic004G340500--Sobic010G078200 Sobic005G172200 Sobic005G172200 Sobic004G340500--Sobic005G172200 Sobic003G421800 Sobic003G421800 Sobic004G340500--Sobic003G421800 Sobic009G229900 Sobic009G229900 Sobic004G340500--Sobic009G229900 Sobic006G082200 Sobic006G082200 Sobic004G340500--Sobic006G082200 Sobic005G083160 Sobic005G083160 Sobic004G340500--Sobic005G083160 Sobic005G003750 Sobic005G003750 Sobic004G340500--Sobic005G003750 Sobic001G378550 Sobic001G378550 Sobic001G339900--Sobic001G378550 Sobic001G339900--Sobic006G272450 Sobic001G339900--Sobic002G052500 Sobic009G116766 Sobic009G116766 Sobic001G339900--Sobic009G116766 Sobic003G245700 Sobic003G245700 Sobic001G339900--Sobic003G245700 Sobic008G078600 Sobic008G078600 Sobic001G339900--Sobic008G078600 Sobic009G010800 Sobic009G010800 Sobic001G339900--Sobic009G010800 Sobic006G185400 Sobic006G185400 Sobic001G339900--Sobic006G185400 Sobic001G361500 Sobic001G361500 Sobic001G339900--Sobic001G361500 Sobic009G164200 Sobic009G164200 Sobic006G272450--Sobic009G164200 Sobic008G023500 Sobic008G023500 Sobic006G272450--Sobic008G023500 Sobic006G090201 Sobic006G090201 Sobic006G272450--Sobic006G090201 Sobic006G272450--Sobic009G010800 Sobic009G070900 Sobic009G070900 Sobic006G272450--Sobic009G070900 Sobic006G272450--Sobic006G185400 Sobic006G272450--Sobic003G245700 Sobic004G330500 Sobic004G330500 Sobic006G272450--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic006G272450--Sobic005G189400 Sobic001G063900--Sobic009G010800 Sobic007G210400 Sobic007G210400 Sobic001G063900--Sobic007G210400 Sobic001G063900--Sobic002G052500 Sobic007G072901 Sobic007G072901 Sobic001G063900--Sobic007G072901 Sobic004G356600 Sobic004G356600 Sobic001G063900--Sobic004G356600 Sobic001G063900--Sobic001G361500 Sobic001G063900--Sobic003G245700 Sobic003G178200 Sobic003G178200 Sobic001G063900--Sobic003G178200 Sobic003G343100 Sobic003G343100 Sobic001G063900--Sobic003G343100 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic002G052500--Sobic006G185400 Sobic002G052500--Sobic009G010800 Sobic002G052500--Sobic003G178200 Sobic002G052500--Sobic004G330500 Sobic003G423100 Sobic003G423100 Sobic006G166300--Sobic003G423100 Sobic006G166300--Sobic003G178200 Sobic006G166300--Sobic003G245700 Sobic006G166300--Sobic007G072901 Sobic002G037000 Sobic002G037000 Sobic006G166300--Sobic002G037000 Sobic005G037500 Sobic005G037500 Sobic006G166300--Sobic005G037500 Sobic006G166300--Sobic007G210400 Sobic006G166300--Sobic006G090201 Sobic006G166300--Sobic005G189400 Sobic003G357000 Sobic003G357000 Sobic004G098200--Sobic003G357000 Sobic004G098200--Sobic002G037000 Sobic004G098200--Sobic008G023500 Sobic001G019100 Sobic001G019100 Sobic004G098200--Sobic001G019100 Sobic003G045800 Sobic003G045800 Sobic004G098200--Sobic003G045800 Sobic001G172900 Sobic001G172900 Sobic004G098200--Sobic001G172900 Sobic004G098200--Sobic009G164200 Sobic004G098200--Sobic009G010800 Sobic004G098200--Sobic005G037500 Sobic007G162500--Sobic003G030000 Sobic002G230400 Sobic002G230400 Sobic007G162500--Sobic002G230400 Sobic007G162500--Sobic009G229900 Sobic004G020100 Sobic004G020100 Sobic007G162500--Sobic004G020100 Sobic003G062101 Sobic003G062101 Sobic007G162500--Sobic003G062101 Sobic007G162500--Sobic001G135300 Sobic008G174500 Sobic008G174500 Sobic007G162500--Sobic008G174500 Sobic010G273800 Sobic010G273800 Sobic007G162500--Sobic010G273800 Sobic002G250550 Sobic002G250550 Sobic007G162500--Sobic002G250550
Octagon: transcription factors


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