Gene annotation
Transcriptome id Sobic.001G006101.1
Synonym -
Functional annotation -
UniProt A0A1B6QGQ6
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF178
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G17020 : senescence-related gene 1
RAP-DB (Rice) LOC_Os03g63900.1 : 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a000304
Brachypodium KQJ97779
Barley HORVU3Hr1G091210.2 , HORVU3Hr1G091210.3 , HORVU3Hr1G091210.1
Wheat TraesCS3D02G403000 , TraesCS3B02G440500 , TraesCS3A02G407800 , TraesCS5A02G539900 , TraesCS4B02G374100 , TraesCS4B02G374100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G105001 - -
2 Sobic.003G392800 gibberellin response modulator protein, putative, expressed -
3 Sobic.001G213000 expressed protein -
4 Sobic.001G037600 - -
5 Sobic.001G492100 lactose permease-related, putative, expressed -
6 Sobic.001G420600 - -
7 Sobic.002G428400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.004G034100 NIN-like protein 2, putative, expressed -
9 Sobic.001G052500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
10 Sobic.007G191400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR7 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
11 Sobic.004G280000 Hydroxyjasmonate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
12 Sobic.003G139333 - -
13 Sobic.002G223550 - -
14 Sobic.004G044700 phytosulfokine receptor precursor, putative, expressed -
15 Sobic.001G108800 expressed protein -
16 Sobic.010G087300 LMBR1 integral membrane protein, putative, expressed -
17 Sobic.010G103600 expressed protein -
18 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
19 Sobic.002G128300 MLA6 protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
20 Sobic.003G126200 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic001G006101 Sobic001G006101 Sobic004G105001 Sobic004G105001 Sobic001G006101--Sobic004G105001 Sobic003G392800 Sobic003G392800 Sobic001G006101--Sobic003G392800 Sobic001G213000 Sobic001G213000 Sobic001G006101--Sobic001G213000 Sobic001G037600 Sobic001G037600 Sobic001G006101--Sobic001G037600 Sobic001G492100 Sobic001G492100 Sobic001G006101--Sobic001G492100 Sobic001G420600 Sobic001G420600 Sobic001G006101--Sobic001G420600 Sobic002G428400 Sobic002G428400 Sobic001G006101--Sobic002G428400 Sobic004G034100 Sobic004G034100 Sobic001G006101--Sobic004G034100 Sobic001G052500 Sobic001G052500 Sobic001G006101--Sobic001G052500 Sobic004G105001--Sobic003G392800 Sobic004G105001--Sobic001G037600 Sobic002G183100 Sobic002G183100 Sobic004G105001--Sobic002G183100 Sobic004G105001--Sobic001G006101 Sobic004G105001--Sobic001G420600 Sobic004G105001--Sobic001G213000 Sobic001G260000 Sobic001G260000 Sobic004G105001--Sobic001G260000 Sobic004G311750 Sobic004G311750 Sobic004G105001--Sobic004G311750 Sobic002G184100 Sobic002G184100 Sobic004G105001--Sobic002G184100 Sobic003G392800--Sobic004G105001 Sobic008G141501 Sobic008G141501 Sobic003G392800--Sobic008G141501 Sobic003G392800--Sobic001G037600 Sobic004G172201 Sobic004G172201 Sobic003G392800--Sobic004G172201 Sobic003G392800--Sobic001G006101 Sobic003G392800--Sobic001G420600 Sobic003G392800--Sobic001G052500 Sobic007G128900 Sobic007G128900 Sobic003G392800--Sobic007G128900 Sobic010G043350 Sobic010G043350 Sobic003G392800--Sobic010G043350 Sobic001G341550 Sobic001G341550 Sobic001G213000--Sobic001G341550 Sobic002G200300 Sobic002G200300 Sobic001G213000--Sobic002G200300 Sobic007G058300 Sobic007G058300 Sobic001G213000--Sobic007G058300 Sobic010G149700 Sobic010G149700 Sobic001G213000--Sobic010G149700 Sobic002G128300 Sobic002G128300 Sobic001G213000--Sobic002G128300 Sobic001G213000--Sobic004G105001 Sobic010G110266 Sobic010G110266 Sobic001G213000--Sobic010G110266 Sobic004G071650 Sobic004G071650 Sobic001G213000--Sobic004G071650 Sobic009G057000 Sobic009G057000 Sobic001G213000--Sobic009G057000 Sobic002G230201 Sobic002G230201 Sobic001G037600--Sobic002G230201 Sobic001G037600--Sobic001G420600 Sobic001G037600--Sobic003G392800 Sobic001G037600--Sobic004G105001 Sobic009G009400 Sobic009G009400 Sobic001G037600--Sobic009G009400 Sobic007G169500 Sobic007G169500 Sobic001G037600--Sobic007G169500 Sobic008G054150 Sobic008G054150 Sobic001G037600--Sobic008G054150 Sobic001G343601 Sobic001G343601 Sobic001G037600--Sobic001G343601 Sobic004G115500 Sobic004G115500 Sobic001G037600--Sobic004G115500 Sobic002G223550 Sobic002G223550 Sobic001G492100--Sobic002G223550 Sobic006G130700 Sobic006G130700 Sobic001G492100--Sobic006G130700 Sobic001G492100--Sobic004G034100 Sobic007G227401 Sobic007G227401 Sobic001G492100--Sobic007G227401 Sobic008G014601 Sobic008G014601 Sobic001G492100--Sobic008G014601 Sobic002G185400 Sobic002G185400 Sobic001G492100--Sobic002G185400 Sobic002G373700 Sobic002G373700 Sobic001G492100--Sobic002G373700 Sobic009G240100 Sobic009G240100 Sobic001G492100--Sobic009G240100 Sobic007G191400 Sobic007G191400 Sobic001G492100--Sobic007G191400 Sobic010G102100 Sobic010G102100 Sobic001G420600--Sobic010G102100 Sobic001G420600--Sobic001G037600 Sobic002G348500 Sobic002G348500 Sobic001G420600--Sobic002G348500 Sobic001G420600--Sobic002G230201 Sobic004G156000 Sobic004G156000 Sobic001G420600--Sobic004G156000 Sobic001G420600--Sobic004G105001 Sobic004G280000 Sobic004G280000 Sobic001G420600--Sobic004G280000 Sobic005G033900 Sobic005G033900 Sobic001G420600--Sobic005G033900 Sobic004G241100 Sobic004G241100 Sobic001G420600--Sobic004G241100 Sobic006G097000 Sobic006G097000 Sobic002G428400--Sobic006G097000 Sobic002G428400--Sobic002G348500 Sobic001G108800 Sobic001G108800 Sobic002G428400--Sobic001G108800 Sobic009G179950 Sobic009G179950 Sobic002G428400--Sobic009G179950 Sobic001G009500 Sobic001G009500 Sobic002G428400--Sobic001G009500 Sobic001G328800 Sobic001G328800 Sobic002G428400--Sobic001G328800 Sobic003G343900 Sobic003G343900 Sobic002G428400--Sobic003G343900 Sobic002G428400--Sobic001G420600 Sobic002G428400--Sobic004G241100 Sobic004G034100--Sobic002G223550 Sobic004G034100--Sobic001G492100 Sobic003G139333 Sobic003G139333 Sobic004G034100--Sobic003G139333 Sobic003G265150 Sobic003G265150 Sobic004G034100--Sobic003G265150 Sobic004G034100--Sobic006G130700 Sobic004G034100--Sobic001G052500 Sobic004G034100--Sobic007G227401 Sobic004G034100--Sobic002G185400 Sobic002G361600 Sobic002G361600 Sobic004G034100--Sobic002G361600 Sobic007G122866 Sobic007G122866 Sobic001G052500--Sobic007G122866 Sobic003G076100 Sobic003G076100 Sobic001G052500--Sobic003G076100 Sobic001G052500--Sobic004G280000 Sobic010G072200 Sobic010G072200 Sobic001G052500--Sobic010G072200 Sobic006G253700 Sobic006G253700 Sobic001G052500--Sobic006G253700 Sobic001G052500--Sobic001G108800 Sobic008G050500 Sobic008G050500 Sobic001G052500--Sobic008G050500 Sobic003G085750 Sobic003G085750 Sobic001G052500--Sobic003G085750 Sobic006G252532 Sobic006G252532 Sobic001G052500--Sobic006G252532
Octagon: transcription factors


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