Gene annotation
Transcriptome id Sobic.003G126200.2
Synonym Sb03g010670
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1W0VX18
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF80
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G65380 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g08900.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001018
Brachypodium KQK23215 , PNT68299 , KQJ98686
Barley HORVU5Hr1G045360.9 , HORVU5Hr1G045360.8 , HORVU5Hr1G045360.4 , HORVU5Hr1G045360.7 , HORVU5Hr1G045360.6 , HORVU5Hr1G045360.3 , HORVU4Hr1G078230.2 , HORVU4Hr1G078230.3 , HORVU4Hr1G078230.1 , HORVU4Hr1G078230.6 , HORVU4Hr1G078230.7 , HORVU4Hr1G078230.4 , HORVU4Hr1G078230.5 , HORVU5Hr1G045360.11 , HORVU5Hr1G045360.13 , HORVU5Hr1G045360.12 , HORVU5Hr1G045360.15 , HORVU5Hr1G045360.16 , HORVU5Hr1G069900.3 , HORVU5Hr1G069900.6 , HORVU5Hr1G069900.5
Wheat TraesCS5D02G150100 , TraesCS4D02G302500 , TraesCS4A02G404500 , TraesCS5A02G142000 , TraesCS4B02G304300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G130200 - -
2 Sobic.007G214400 EF hand family protein, putative, expressed -
3 Sobic.009G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase, putative, expressed -
4 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
5 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
6 Sobic.008G070350 - K01945: phosphoribosylamine---glycine ligase
7 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
8 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.001G371800 expressed protein -
10 Sobic.003G394400 ubiquitin family protein, putative, expressed -
11 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
12 Sobic.007G214600 EF hand family protein, putative, expressed -
13 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
15 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
17 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
18 Sobic.005G016700 DUF567 domain containing protein, putative, expressed -
19 Sobic.009G031900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -


Gene co-expression network
sample Sobic003G126200 Sobic003G126200 Sobic008G130200 Sobic008G130200 Sobic003G126200--Sobic008G130200 Sobic007G214400 Sobic007G214400 Sobic003G126200--Sobic007G214400 Sobic009G198000 Sobic009G198000 Sobic003G126200--Sobic009G198000 Sobic004G280200 Sobic004G280200 Sobic003G126200--Sobic004G280200 Sobic009G169000 Sobic009G169000 Sobic003G126200--Sobic009G169000 Sobic008G070350 Sobic008G070350 Sobic003G126200--Sobic008G070350 Sobic002G068600 Sobic002G068600 Sobic003G126200--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G126200--Sobic003G086600 Sobic001G371800 Sobic001G371800 Sobic003G126200--Sobic001G371800 Sobic008G130200--Sobic003G126200 Sobic008G130200--Sobic008G070350 Sobic008G130200--Sobic009G198000 Sobic001G190200 Sobic001G190200 Sobic008G130200--Sobic001G190200 Sobic010G031900 Sobic010G031900 Sobic008G130200--Sobic010G031900 Sobic006G207000 Sobic006G207000 Sobic008G130200--Sobic006G207000 Sobic001G319600 Sobic001G319600 Sobic008G130200--Sobic001G319600 Sobic001G231600 Sobic001G231600 Sobic008G130200--Sobic001G231600 Sobic008G130200--Sobic009G169000 Sobic003G394400 Sobic003G394400 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic002G389000 Sobic002G389000 Sobic007G214400--Sobic002G389000 Sobic001G107800 Sobic001G107800 Sobic007G214400--Sobic001G107800 Sobic007G214400--Sobic002G068600 Sobic001G254100 Sobic001G254100 Sobic007G214400--Sobic001G254100 Sobic002G261200 Sobic002G261200 Sobic007G214400--Sobic002G261200 Sobic007G214400--Sobic003G086600 Sobic007G214600 Sobic007G214600 Sobic007G214400--Sobic007G214600 Sobic005G051200 Sobic005G051200 Sobic009G198000--Sobic005G051200 Sobic005G063100 Sobic005G063100 Sobic009G198000--Sobic005G063100 Sobic008G050600 Sobic008G050600 Sobic009G198000--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic009G198000--Sobic003G286600 Sobic001G140900 Sobic001G140900 Sobic009G198000--Sobic001G140900 Sobic008G136400 Sobic008G136400 Sobic009G198000--Sobic008G136400 Sobic003G116800 Sobic003G116800 Sobic009G198000--Sobic003G116800 Sobic009G035200 Sobic009G035200 Sobic009G198000--Sobic009G035200 Sobic002G251000 Sobic002G251000 Sobic009G198000--Sobic002G251000 Sobic004G280200--Sobic009G169000 Sobic001G405500 Sobic001G405500 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic007G026600 Sobic007G026600 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic004G280200--Sobic002G261200 Sobic001G320900 Sobic001G320900 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic009G169000--Sobic004G280200 Sobic003G197200 Sobic003G197200 Sobic009G169000--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic009G169000--Sobic003G355100 Sobic009G169000--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic009G169000--Sobic003G148600 Sobic009G169000--Sobic001G107800 Sobic009G169000--Sobic007G026600 Sobic001G397200 Sobic001G397200 Sobic008G070350--Sobic001G397200 Sobic008G070350--Sobic009G035200 Sobic008G070350--Sobic005G051200 Sobic005G103500 Sobic005G103500 Sobic008G070350--Sobic005G103500 Sobic001G309600 Sobic001G309600 Sobic008G070350--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic008G070350--Sobic006G032700 Sobic008G070350--Sobic007G026600 Sobic008G070350--Sobic004G280200 Sobic008G070350--Sobic003G086600 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic004G166200 Sobic004G166200 Sobic002G068600--Sobic004G166200 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G068600--Sobic002G261200 Sobic002G068600--Sobic007G026600 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G201200 Sobic001G201200 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600
Octagon: transcription factors


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