Gene annotation
Transcriptome id Sobic.001G159900.1
Synonym Sb01g013940
Functional annotation uncharacterized protein At4g06744 precursor, putative, expressed
UniProt A0A1Z5S5W1
Pfam PF13855
Panther DB PTHR32093
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G13340 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os03g43650.1 : uncharacterized protein At4g06744 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a007337 , Zm00025a016581
Brachypodium KQK14049
Barley HORVU5Hr1G093410.1
Wheat TraesCS5A02G436000 , TraesCS5D02G443700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G261300 expressed protein -
2 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.007G030501 - -
4 Sobic.007G164400 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
5 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
6 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
7 Sobic.009G224500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
9 Sobic.010G206800 expressed protein -
10 Sobic.007G002800 phospholipase C, putative, expressed -
11 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.001G264700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed -
13 Sobic.006G157900 C2 domain containing protein, putative, expressed -
14 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G059700 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
18 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
19 Sobic.010G029700 tentative name(PubMedID : 31536532)@oxidoreductase, putative, expressed -
20 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G159900 Sobic001G159900 Sobic002G261300 Sobic002G261300 Sobic001G159900--Sobic002G261300 Sobic010G085800 Sobic010G085800 Sobic001G159900--Sobic010G085800 Sobic007G030501 Sobic007G030501 Sobic001G159900--Sobic007G030501 Sobic007G164400 Sobic007G164400 Sobic001G159900--Sobic007G164400 Sobic009G240600 Sobic009G240600 Sobic001G159900--Sobic009G240600 Sobic007G218800 Sobic007G218800 Sobic001G159900--Sobic007G218800 Sobic009G224500 Sobic009G224500 Sobic001G159900--Sobic009G224500 Sobic004G062500 Sobic004G062500 Sobic001G159900--Sobic004G062500 Sobic010G206800 Sobic010G206800 Sobic001G159900--Sobic010G206800 Sobic002G261300--Sobic007G164400 Sobic002G261300--Sobic007G030501 Sobic002G261300--Sobic001G159900 Sobic004G234100 Sobic004G234100 Sobic002G261300--Sobic004G234100 Sobic001G434800 Sobic001G434800 Sobic002G261300--Sobic001G434800 Sobic006G277800 Sobic006G277800 Sobic002G261300--Sobic006G277800 Sobic001G360400 Sobic001G360400 Sobic002G261300--Sobic001G360400 Sobic002G354200 Sobic002G354200 Sobic002G261300--Sobic002G354200 Sobic002G250000 Sobic002G250000 Sobic002G261300--Sobic002G250000 Sobic001G059700 Sobic001G059700 Sobic010G085800--Sobic001G059700 Sobic001G310300 Sobic001G310300 Sobic010G085800--Sobic001G310300 Sobic010G008400 Sobic010G008400 Sobic010G085800--Sobic010G008400 Sobic009G109000 Sobic009G109000 Sobic010G085800--Sobic009G109000 Sobic004G297900 Sobic004G297900 Sobic010G085800--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic010G085800--Sobic008G009400 Sobic009G088900 Sobic009G088900 Sobic010G085800--Sobic009G088900 Sobic003G311800 Sobic003G311800 Sobic010G085800--Sobic003G311800 Sobic010G085800--Sobic007G218800 Sobic007G176100 Sobic007G176100 Sobic007G030501--Sobic007G176100 Sobic007G176000 Sobic007G176000 Sobic007G030501--Sobic007G176000 Sobic006G197100 Sobic006G197100 Sobic007G030501--Sobic006G197100 Sobic003G368600 Sobic003G368600 Sobic007G030501--Sobic003G368600 Sobic004G349125 Sobic004G349125 Sobic007G030501--Sobic004G349125 Sobic004G139300 Sobic004G139300 Sobic007G030501--Sobic004G139300 Sobic007G030501--Sobic002G261300 Sobic010G252500 Sobic010G252500 Sobic007G030501--Sobic010G252500 Sobic002G042200 Sobic002G042200 Sobic007G030501--Sobic002G042200 Sobic007G164400--Sobic002G261300 Sobic007G164400--Sobic001G434800 Sobic009G183900 Sobic009G183900 Sobic007G164400--Sobic009G183900 Sobic007G164400--Sobic006G277800 Sobic008G173500 Sobic008G173500 Sobic007G164400--Sobic008G173500 Sobic001G382900 Sobic001G382900 Sobic007G164400--Sobic001G382900 Sobic004G229400 Sobic004G229400 Sobic007G164400--Sobic004G229400 Sobic005G110406 Sobic005G110406 Sobic007G164400--Sobic005G110406 Sobic002G351300 Sobic002G351300 Sobic007G164400--Sobic002G351300 Sobic001G481400 Sobic001G481400 Sobic009G240600--Sobic001G481400 Sobic007G227300 Sobic007G227300 Sobic009G240600--Sobic007G227300 Sobic001G231700 Sobic001G231700 Sobic009G240600--Sobic001G231700 Sobic006G103000 Sobic006G103000 Sobic009G240600--Sobic006G103000 Sobic001G500000 Sobic001G500000 Sobic009G240600--Sobic001G500000 Sobic002G287100 Sobic002G287100 Sobic009G240600--Sobic002G287100 Sobic001G476500 Sobic001G476500 Sobic009G240600--Sobic001G476500 Sobic003G417800 Sobic003G417800 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic008G055100 Sobic008G055100 Sobic007G218800--Sobic008G055100 Sobic002G154600 Sobic002G154600 Sobic007G218800--Sobic002G154600 Sobic007G218800--Sobic007G176000 Sobic007G218800--Sobic010G252500 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic007G218800--Sobic010G085800 Sobic001G471200 Sobic001G471200 Sobic009G224500--Sobic001G471200 Sobic009G224500--Sobic006G103000 Sobic009G224500--Sobic009G240600 Sobic002G329000 Sobic002G329000 Sobic009G224500--Sobic002G329000 Sobic009G224500--Sobic001G192200 Sobic007G002800 Sobic007G002800 Sobic009G224500--Sobic007G002800 Sobic009G224500--Sobic001G231700 Sobic004G228500 Sobic004G228500 Sobic009G224500--Sobic004G228500 Sobic005G093000 Sobic005G093000 Sobic009G224500--Sobic005G093000 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G212300 Sobic004G212300 Sobic004G062500--Sobic004G212300 Sobic004G062500--Sobic007G218800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic003G219800 Sobic003G219800 Sobic004G062500--Sobic003G219800 Sobic010G206800--Sobic001G360400 Sobic010G206800--Sobic007G030501 Sobic010G206800--Sobic003G368600 Sobic010G206800--Sobic002G261300 Sobic007G047500 Sobic007G047500 Sobic010G206800--Sobic007G047500 Sobic006G274933 Sobic006G274933 Sobic010G206800--Sobic006G274933 Sobic001G235800 Sobic001G235800 Sobic010G206800--Sobic001G235800 Sobic010G206800--Sobic010G252500 Sobic010G206800--Sobic001G159900
Octagon: transcription factors


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