Gene annotation
Transcriptome id Sobic.001G161100.1
Synonym Sb01g014070
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5S5V9
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF865
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42920 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os03g43470.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a007344
Brachypodium KQK14068
Barley HORVU5Hr1G093530.8 , HORVU5Hr1G093530.4 , HORVU5Hr1G093530.11 , HORVU5Hr1G093530.7 , HORVU5Hr1G093530.6 , HORVU5Hr1G093530.5 , HORVU5Hr1G093530.3 , HORVU5Hr1G093530.2 , HORVU5Hr1G093530.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G161100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G179500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
3 Sobic.001G520100 MLO domain containing protein, putative, expressed K08472: mlo protein
4 Sobic.009G202600 glycerol-3-phosphate acyltransferase 1, putative, expressed K13508: glycerol-3-phosphate acyltransferase
5 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
6 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
7 Sobic.003G369000 - -
8 Sobic.005G191500 ATBPM2, putative, expressed -
9 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
10 Sobic.002G395200 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.006G211701 - -
12 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
13 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
14 Sobic.002G337001 - -
15 Sobic.007G178500 cytochrome P450, putative, expressed -
16 Sobic.004G270400 amino acid permease family protein, putative, expressed -
17 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
18 Sobic.010G089200 expressed protein -
19 Sobic.001G260850 - -
20 Sobic.001G321600 dehydration response related protein, putative, expressed -


Gene co-expression network
sample Sobic001G161100 Sobic001G161100 Sobic010G179500 Sobic010G179500 Sobic001G161100--Sobic010G179500 Sobic001G339100 Sobic001G339100 Sobic001G161100--Sobic001G339100 Sobic001G520100 Sobic001G520100 Sobic001G161100--Sobic001G520100 Sobic009G202600 Sobic009G202600 Sobic001G161100--Sobic009G202600 Sobic003G088800 Sobic003G088800 Sobic001G161100--Sobic003G088800 Sobic007G023300 Sobic007G023300 Sobic001G161100--Sobic007G023300 Sobic003G369000 Sobic003G369000 Sobic001G161100--Sobic003G369000 Sobic005G191500 Sobic005G191500 Sobic001G161100--Sobic005G191500 Sobic008G073400 Sobic008G073400 Sobic001G161100--Sobic008G073400 Sobic010G179500--Sobic001G520100 Sobic001G321600 Sobic001G321600 Sobic010G179500--Sobic001G321600 Sobic005G063900 Sobic005G063900 Sobic010G179500--Sobic005G063900 Sobic002G337001 Sobic002G337001 Sobic010G179500--Sobic002G337001 Sobic010G179500--Sobic001G161100 Sobic010G089200 Sobic010G089200 Sobic010G179500--Sobic010G089200 Sobic010G179500--Sobic009G202600 Sobic010G179500--Sobic008G073400 Sobic001G019300 Sobic001G019300 Sobic010G179500--Sobic001G019300 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic001G339100--Sobic007G023300 Sobic001G407900 Sobic001G407900 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic007G178500 Sobic007G178500 Sobic001G339100--Sobic007G178500 Sobic005G021600 Sobic005G021600 Sobic001G339100--Sobic005G021600 Sobic008G063500 Sobic008G063500 Sobic001G339100--Sobic008G063500 Sobic003G221700 Sobic003G221700 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic001G520100--Sobic001G321600 Sobic001G520100--Sobic010G089200 Sobic001G520100--Sobic005G063900 Sobic001G520100--Sobic001G019300 Sobic001G520100--Sobic010G179500 Sobic002G257100 Sobic002G257100 Sobic001G520100--Sobic002G257100 Sobic001G198700 Sobic001G198700 Sobic001G520100--Sobic001G198700 Sobic001G520100--Sobic008G073400 Sobic009G153200 Sobic009G153200 Sobic001G520100--Sobic009G153200 Sobic009G202600--Sobic002G337001 Sobic009G202600--Sobic005G063900 Sobic009G202600--Sobic003G088800 Sobic009G202600--Sobic001G019300 Sobic009G202600--Sobic001G520100 Sobic001G435500 Sobic001G435500 Sobic009G202600--Sobic001G435500 Sobic001G260850 Sobic001G260850 Sobic009G202600--Sobic001G260850 Sobic002G395200 Sobic002G395200 Sobic009G202600--Sobic002G395200 Sobic002G265400 Sobic002G265400 Sobic009G202600--Sobic002G265400 Sobic001G275200 Sobic001G275200 Sobic003G088800--Sobic001G275200 Sobic003G088800--Sobic001G435500 Sobic003G088800--Sobic002G337001 Sobic008G015100 Sobic008G015100 Sobic003G088800--Sobic008G015100 Sobic003G088800--Sobic001G019300 Sobic005G055900 Sobic005G055900 Sobic003G088800--Sobic005G055900 Sobic005G203900 Sobic005G203900 Sobic003G088800--Sobic005G203900 Sobic003G088800--Sobic003G369000 Sobic005G099700 Sobic005G099700 Sobic003G088800--Sobic005G099700 Sobic004G193400 Sobic004G193400 Sobic007G023300--Sobic004G193400 Sobic002G414400 Sobic002G414400 Sobic007G023300--Sobic002G414400 Sobic007G023300--Sobic001G407900 Sobic007G023300--Sobic008G063500 Sobic001G206200 Sobic001G206200 Sobic007G023300--Sobic001G206200 Sobic002G338000 Sobic002G338000 Sobic007G023300--Sobic002G338000 Sobic007G023300--Sobic001G339100 Sobic007G023300--Sobic007G178500 Sobic002G030200 Sobic002G030200 Sobic007G023300--Sobic002G030200 Sobic002G352100 Sobic002G352100 Sobic003G369000--Sobic002G352100 Sobic010G189300 Sobic010G189300 Sobic003G369000--Sobic010G189300 Sobic007G136900 Sobic007G136900 Sobic003G369000--Sobic007G136900 Sobic001G046900 Sobic001G046900 Sobic003G369000--Sobic001G046900 Sobic009G165200 Sobic009G165200 Sobic003G369000--Sobic009G165200 Sobic009G229700 Sobic009G229700 Sobic003G369000--Sobic009G229700 Sobic003G055300 Sobic003G055300 Sobic003G369000--Sobic003G055300 Sobic001G066600 Sobic001G066600 Sobic003G369000--Sobic001G066600 Sobic001G070500 Sobic001G070500 Sobic003G369000--Sobic001G070500 Sobic003G106500 Sobic003G106500 Sobic005G191500--Sobic003G106500 Sobic005G191500--Sobic008G073400 Sobic005G191500--Sobic001G520100 Sobic005G191500--Sobic001G019300 Sobic005G191500--Sobic001G161100 Sobic005G191500--Sobic007G178500 Sobic003G015500 Sobic003G015500 Sobic005G191500--Sobic003G015500 Sobic005G191500--Sobic010G179500 Sobic005G191500--Sobic001G260850 Sobic002G195700 Sobic002G195700 Sobic008G073400--Sobic002G195700 Sobic008G073400--Sobic001G019300 Sobic008G073400--Sobic003G106500 Sobic008G073400--Sobic001G321600 Sobic001G005500 Sobic001G005500 Sobic008G073400--Sobic001G005500 Sobic002G281000 Sobic002G281000 Sobic008G073400--Sobic002G281000 Sobic008G073400--Sobic005G021600 Sobic008G073400--Sobic001G198700 Sobic005G089000 Sobic005G089000 Sobic008G073400--Sobic005G089000
Octagon: transcription factors


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