Gene annotation
Transcriptome id Sobic.001G227900.1
Synonym RR1, EARLY HEADING DATE 1 , Sb01g019980, SbEHD1, Ehd1;EARLY HEADING DATE 1 , ARR1
Functional annotation - (PubMedID : 21930910)
- (PubMedID : 24884377)
two-component response regulator, putative, expressed
UniProt A0A1B6QKF9
Pfam PF00249 PF00072
Panther DB PTHR26402 PTHR26402:SF538
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology K14491; two-component response regulator ARR-B family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT3G16857 : response regulator 1
RAP-DB (Rice) LOC_Os02g55320.1 : two-component response regulator, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G416000 - -
2 Sobic.007G198400 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.003G080700 Ser/Thr protein kinase, putative, expressed -
4 Sobic.002G017500 expressed protein -
5 Sobic.005G093800 NB-ARC domain containing protein, expressed K13457: RPM1, disease resistance protein RPM1
6 Sobic.008G166550 - -
7 Sobic.007G202300 expressed protein -
8 Sobic.009G130000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
9 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
10 Sobic.005G156400 phytosulfokine receptor precursor, putative, expressed -
11 Sobic.003G190100 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
12 Sobic.002G115050 - -
13 Sobic.008G101100 powdery mildew resistance protein PM3A, putative, expressed -
14 Sobic.003G127001 - -
15 Sobic.002G431500 - -
16 Sobic.002G115075 - -
17 Sobic.006G072601 - -
18 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
19 Sobic.008G084300 - -
20 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic001G227900 Sobic001G227900 Sobic003G416000 Sobic003G416000 Sobic001G227900--Sobic003G416000 Sobic007G198400 Sobic007G198400 Sobic001G227900--Sobic007G198400 Sobic003G080700 Sobic003G080700 Sobic001G227900--Sobic003G080700 Sobic002G017500 Sobic002G017500 Sobic001G227900--Sobic002G017500 Sobic005G093800 Sobic005G093800 Sobic001G227900--Sobic005G093800 Sobic008G166550 Sobic008G166550 Sobic001G227900--Sobic008G166550 Sobic007G202300 Sobic007G202300 Sobic001G227900--Sobic007G202300 Sobic009G130000 Sobic009G130000 Sobic001G227900--Sobic009G130000 Sobic002G244200 Sobic002G244200 Sobic001G227900--Sobic002G244200 Sobic003G416000--Sobic002G017500 Sobic008G101100 Sobic008G101100 Sobic003G416000--Sobic008G101100 Sobic003G416000--Sobic008G166550 Sobic003G416000--Sobic002G244200 Sobic005G089400 Sobic005G089400 Sobic003G416000--Sobic005G089400 Sobic003G416000--Sobic001G227900 Sobic003G416000--Sobic007G202300 Sobic003G416000--Sobic003G080700 Sobic005G133600 Sobic005G133600 Sobic003G416000--Sobic005G133600 Sobic007G141380 Sobic007G141380 Sobic007G198400--Sobic007G141380 Sobic007G198400--Sobic001G227900 Sobic004G230700 Sobic004G230700 Sobic007G198400--Sobic004G230700 Sobic006G072601 Sobic006G072601 Sobic007G198400--Sobic006G072601 Sobic004G038800 Sobic004G038800 Sobic007G198400--Sobic004G038800 Sobic008G105366 Sobic008G105366 Sobic007G198400--Sobic008G105366 Sobic007G198400--Sobic007G202300 Sobic007G198400--Sobic002G017500 Sobic007G198400--Sobic003G416000 Sobic003G080700--Sobic002G017500 Sobic005G179300 Sobic005G179300 Sobic003G080700--Sobic005G179300 Sobic001G413000 Sobic001G413000 Sobic003G080700--Sobic001G413000 Sobic001G243200 Sobic001G243200 Sobic003G080700--Sobic001G243200 Sobic003G080700--Sobic002G244200 Sobic002G390500 Sobic002G390500 Sobic003G080700--Sobic002G390500 Sobic010G131700 Sobic010G131700 Sobic003G080700--Sobic010G131700 Sobic003G190100 Sobic003G190100 Sobic003G080700--Sobic003G190100 Sobic003G080700--Sobic003G416000 Sobic002G017500--Sobic003G416000 Sobic002G017500--Sobic003G080700 Sobic002G017500--Sobic008G166550 Sobic002G017500--Sobic002G244200 Sobic002G017500--Sobic008G101100 Sobic002G017500--Sobic007G202300 Sobic007G090403 Sobic007G090403 Sobic002G017500--Sobic007G090403 Sobic003G160100 Sobic003G160100 Sobic002G017500--Sobic003G160100 Sobic002G017500--Sobic001G413000 Sobic005G093800--Sobic003G190100 Sobic006G177900 Sobic006G177900 Sobic005G093800--Sobic006G177900 Sobic004G271600 Sobic004G271600 Sobic005G093800--Sobic004G271600 Sobic002G173100 Sobic002G173100 Sobic005G093800--Sobic002G173100 Sobic002G077400 Sobic002G077400 Sobic005G093800--Sobic002G077400 Sobic010G121200 Sobic010G121200 Sobic005G093800--Sobic010G121200 Sobic002G115050 Sobic002G115050 Sobic005G093800--Sobic002G115050 Sobic005G093800--Sobic008G166550 Sobic001G492600 Sobic001G492600 Sobic005G093800--Sobic001G492600 Sobic002G431500 Sobic002G431500 Sobic008G166550--Sobic002G431500 Sobic008G166550--Sobic007G202300 Sobic008G166550--Sobic002G244200 Sobic008G166550--Sobic003G416000 Sobic008G166550--Sobic008G101100 Sobic005G095000 Sobic005G095000 Sobic008G166550--Sobic005G095000 Sobic008G166550--Sobic002G017500 Sobic008G166550--Sobic002G115050 Sobic008G166550--Sobic005G093800 Sobic007G202300--Sobic008G166550 Sobic007G202300--Sobic002G244200 Sobic001G000300 Sobic001G000300 Sobic007G202300--Sobic001G000300 Sobic009G248801 Sobic009G248801 Sobic007G202300--Sobic009G248801 Sobic007G202300--Sobic008G101100 Sobic007G202300--Sobic002G017500 Sobic007G202300--Sobic003G416000 Sobic007G202300--Sobic005G093800 Sobic007G185300 Sobic007G185300 Sobic007G202300--Sobic007G185300 Sobic009G130000--Sobic005G093800 Sobic005G156400 Sobic005G156400 Sobic009G130000--Sobic005G156400 Sobic006G276100 Sobic006G276100 Sobic009G130000--Sobic006G276100 Sobic009G130000--Sobic001G227900 Sobic009G130000--Sobic002G115050 Sobic005G075100 Sobic005G075100 Sobic009G130000--Sobic005G075100 Sobic003G129600 Sobic003G129600 Sobic009G130000--Sobic003G129600 Sobic002G059932 Sobic002G059932 Sobic009G130000--Sobic002G059932 Sobic009G130000--Sobic003G190100 Sobic002G244200--Sobic009G248801 Sobic002G244200--Sobic005G095000 Sobic002G244200--Sobic008G166550 Sobic002G244200--Sobic007G090403 Sobic007G133000 Sobic007G133000 Sobic002G244200--Sobic007G133000 Sobic002G244200--Sobic003G160100 Sobic004G086150 Sobic004G086150 Sobic002G244200--Sobic004G086150 Sobic002G244200--Sobic007G202300 Sobic002G244200--Sobic003G416000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.