Gene annotation
Transcriptome id Sobic.001G340400.2,Sobic.001G340400.1
Synonym SRG1, ATSRG1, Sb01g032720
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
leucoanthocyanidin dioxygenase, putative, expressed
UniProt A0A1B6QP28 , C5WWN0
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF96
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G17020 : senescence-related gene 1
RAP-DB (Rice) LOC_Os03g32470.1 : leucoanthocyanidin dioxygenase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G039200 expressed protein -
2 Sobic.008G144600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.001G487400 expressed protein -
4 Sobic.001G348300 expressed protein -
5 Sobic.006G019200 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR4 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
6 Sobic.005G014000 WRKY64, expressed -
7 Sobic.006G150700 DEF12 - Defensin and Defensin-like DEFL family, expressed -
8 Sobic.002G093700 Jacalin-like lectin domain containing protein, putative, expressed -
9 Sobic.001G176300 cytochrome P450, putative, expressed -
10 Sobic.005G063300 Fatty acid reductase 4 FAR4 (At)(PubMedID : 27208977)@male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
11 Sobic.009G209500 RING/U-box superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -
13 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
14 Sobic.001G364400 cytochrome P450, putative, expressed -
15 Sobic.001G525200 expressed protein -
16 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.009G035300 expressed protein -
18 Sobic.008G128066 - -
19 Sobic.007G015200 cytochrome P450, putative, expressed -
20 Sobic.006G217900 Leucine-rich receptor-like protein kinase("PubMedID : 26759170,PubMedID : 24597475")@leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed K13420: LRR receptor-like serine/threonine-protein kinase FLS2


Gene co-expression network
sample Sobic001G340400 Sobic001G340400 Sobic001G039200 Sobic001G039200 Sobic001G340400--Sobic001G039200 Sobic008G144600 Sobic008G144600 Sobic001G340400--Sobic008G144600 Sobic001G487400 Sobic001G487400 Sobic001G340400--Sobic001G487400 Sobic001G348300 Sobic001G348300 Sobic001G340400--Sobic001G348300 Sobic006G019200 Sobic006G019200 Sobic001G340400--Sobic006G019200 Sobic005G014000 Sobic005G014000 Sobic001G340400--Sobic005G014000 Sobic006G150700 Sobic006G150700 Sobic001G340400--Sobic006G150700 Sobic002G093700 Sobic002G093700 Sobic001G340400--Sobic002G093700 Sobic001G176300 Sobic001G176300 Sobic001G340400--Sobic001G176300 Sobic001G039200--Sobic001G340400 Sobic001G039200--Sobic006G150700 Sobic001G039200--Sobic008G144600 Sobic001G039200--Sobic001G176300 Sobic001G039200--Sobic005G014000 Sobic003G053300 Sobic003G053300 Sobic001G039200--Sobic003G053300 Sobic001G039200--Sobic001G348300 Sobic005G063300 Sobic005G063300 Sobic001G039200--Sobic005G063300 Sobic009G035300 Sobic009G035300 Sobic001G039200--Sobic009G035300 Sobic008G144600--Sobic001G487400 Sobic008G144600--Sobic006G150700 Sobic002G213600 Sobic002G213600 Sobic008G144600--Sobic002G213600 Sobic003G016100 Sobic003G016100 Sobic008G144600--Sobic003G016100 Sobic003G363900 Sobic003G363900 Sobic008G144600--Sobic003G363900 Sobic008G144600--Sobic001G039200 Sobic008G144600--Sobic001G340400 Sobic003G079400 Sobic003G079400 Sobic008G144600--Sobic003G079400 Sobic008G144600--Sobic002G093700 Sobic001G487400--Sobic008G144600 Sobic001G487400--Sobic002G093700 Sobic001G487400--Sobic006G019200 Sobic004G045400 Sobic004G045400 Sobic001G487400--Sobic004G045400 Sobic008G128066 Sobic008G128066 Sobic001G487400--Sobic008G128066 Sobic009G209500 Sobic009G209500 Sobic001G487400--Sobic009G209500 Sobic001G487400--Sobic001G340400 Sobic007G144501 Sobic007G144501 Sobic001G487400--Sobic007G144501 Sobic001G256200 Sobic001G256200 Sobic001G487400--Sobic001G256200 Sobic002G053700 Sobic002G053700 Sobic001G348300--Sobic002G053700 Sobic001G348300--Sobic001G176300 Sobic001G348500 Sobic001G348500 Sobic001G348300--Sobic001G348500 Sobic001G348300--Sobic001G039200 Sobic005G063400 Sobic005G063400 Sobic001G348300--Sobic005G063400 Sobic002G425000 Sobic002G425000 Sobic001G348300--Sobic002G425000 Sobic010G161800 Sobic010G161800 Sobic001G348300--Sobic010G161800 Sobic001G348300--Sobic001G340400 Sobic006G122800 Sobic006G122800 Sobic001G348300--Sobic006G122800 Sobic006G019200--Sobic005G014000 Sobic006G019200--Sobic002G093700 Sobic006G019200--Sobic001G487400 Sobic006G019200--Sobic008G144600 Sobic006G019200--Sobic009G209500 Sobic006G019200--Sobic001G340400 Sobic001G237900 Sobic001G237900 Sobic006G019200--Sobic001G237900 Sobic002G125000 Sobic002G125000 Sobic006G019200--Sobic002G125000 Sobic002G124500 Sobic002G124500 Sobic006G019200--Sobic002G124500 Sobic005G014000--Sobic006G019200 Sobic005G014000--Sobic001G039200 Sobic005G014000--Sobic008G144600 Sobic005G014000--Sobic001G237900 Sobic010G226400 Sobic010G226400 Sobic005G014000--Sobic010G226400 Sobic005G014000--Sobic002G093700 Sobic005G014000--Sobic001G487400 Sobic005G014000--Sobic001G340400 Sobic010G003600 Sobic010G003600 Sobic005G014000--Sobic010G003600 Sobic006G150700--Sobic003G016100 Sobic006G150700--Sobic002G213600 Sobic006G150700--Sobic008G144600 Sobic006G150700--Sobic003G053300 Sobic002G003800 Sobic002G003800 Sobic006G150700--Sobic002G003800 Sobic003G316000 Sobic003G316000 Sobic006G150700--Sobic003G316000 Sobic010G212500 Sobic010G212500 Sobic006G150700--Sobic010G212500 Sobic006G249300 Sobic006G249300 Sobic006G150700--Sobic006G249300 Sobic006G150700--Sobic009G035300 Sobic002G093700--Sobic001G487400 Sobic002G093700--Sobic008G128066 Sobic002G093700--Sobic006G019200 Sobic002G093700--Sobic007G144501 Sobic006G234900 Sobic006G234900 Sobic002G093700--Sobic006G234900 Sobic002G115025 Sobic002G115025 Sobic002G093700--Sobic002G115025 Sobic002G093700--Sobic004G045400 Sobic002G093700--Sobic001G256200 Sobic006G078900 Sobic006G078900 Sobic002G093700--Sobic006G078900 Sobic001G176300--Sobic001G039200 Sobic001G176300--Sobic001G348300 Sobic001G176300--Sobic001G348500 Sobic001G176300--Sobic006G150700 Sobic001G176300--Sobic003G053300 Sobic009G088900 Sobic009G088900 Sobic001G176300--Sobic009G088900 Sobic001G176300--Sobic009G035300 Sobic001G176300--Sobic001G340400 Sobic005G073000 Sobic005G073000 Sobic001G176300--Sobic005G073000
Octagon: transcription factors


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