Gene annotation
Transcriptome id Sobic.009G209500.1
Synonym ATL6, Sb09g026590
Functional annotation RING/U-box superfamily protein( (PubMedID : 26759170,(PubMedID : 24597475)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YUG4
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g37760.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013835 , Zm00025a002731 , Zm00025a004942 , Zm00025a014119
Brachypodium PNT64755
Barley HORVU6Hr1G022590.2 , HORVU6Hr1G022590.1 , HORVU5Hr1G069980.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G487400 expressed protein -
2 Sobic.002G125000 aquaporin protein, putative, expressed K09872: aquaporin PIP
3 Sobic.006G019200 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR4 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.002G093700 Jacalin-like lectin domain containing protein, putative, expressed -
5 Sobic.001G054500 expressed protein -
6 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
7 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -
8 Sobic.008G144600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
12 Sobic.002G347500 expressed protein -
13 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
14 Sobic.005G014000 WRKY64, expressed -
15 Sobic.006G217900 Leucine-rich receptor-like protein kinase("PubMedID : 26759170,PubMedID : 24597475")@leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed K13420: LRR receptor-like serine/threonine-protein kinase FLS2
16 Sobic.006G159100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.002G040900 VQ domain containing protein, putative, expressed -
18 Sobic.009G009700 expressed protein -
19 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
20 Sobic.001G340400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -


Gene co-expression network
sample Sobic009G209500 Sobic009G209500 Sobic001G487400 Sobic001G487400 Sobic009G209500--Sobic001G487400 Sobic002G125000 Sobic002G125000 Sobic009G209500--Sobic002G125000 Sobic006G019200 Sobic006G019200 Sobic009G209500--Sobic006G019200 Sobic002G093700 Sobic002G093700 Sobic009G209500--Sobic002G093700 Sobic001G054500 Sobic001G054500 Sobic009G209500--Sobic001G054500 Sobic004G045400 Sobic004G045400 Sobic009G209500--Sobic004G045400 Sobic003G155600 Sobic003G155600 Sobic009G209500--Sobic003G155600 Sobic008G144600 Sobic008G144600 Sobic009G209500--Sobic008G144600 Sobic002G042000 Sobic002G042000 Sobic009G209500--Sobic002G042000 Sobic001G487400--Sobic008G144600 Sobic001G487400--Sobic002G093700 Sobic001G487400--Sobic006G019200 Sobic001G487400--Sobic004G045400 Sobic008G128066 Sobic008G128066 Sobic001G487400--Sobic008G128066 Sobic001G487400--Sobic009G209500 Sobic001G340400 Sobic001G340400 Sobic001G487400--Sobic001G340400 Sobic007G144501 Sobic007G144501 Sobic001G487400--Sobic007G144501 Sobic001G256200 Sobic001G256200 Sobic001G487400--Sobic001G256200 Sobic002G125000--Sobic009G209500 Sobic002G125000--Sobic002G093700 Sobic002G125000--Sobic004G045400 Sobic006G159100 Sobic006G159100 Sobic002G125000--Sobic006G159100 Sobic002G125000--Sobic006G019200 Sobic003G364950 Sobic003G364950 Sobic002G125000--Sobic003G364950 Sobic006G101300 Sobic006G101300 Sobic002G125000--Sobic006G101300 Sobic001G265400 Sobic001G265400 Sobic002G125000--Sobic001G265400 Sobic002G125000--Sobic001G054500 Sobic005G014000 Sobic005G014000 Sobic006G019200--Sobic005G014000 Sobic006G019200--Sobic002G093700 Sobic006G019200--Sobic001G487400 Sobic006G019200--Sobic008G144600 Sobic006G019200--Sobic009G209500 Sobic006G019200--Sobic001G340400 Sobic001G237900 Sobic001G237900 Sobic006G019200--Sobic001G237900 Sobic006G019200--Sobic002G125000 Sobic002G124500 Sobic002G124500 Sobic006G019200--Sobic002G124500 Sobic002G093700--Sobic001G487400 Sobic002G093700--Sobic008G128066 Sobic002G093700--Sobic006G019200 Sobic002G093700--Sobic007G144501 Sobic006G234900 Sobic006G234900 Sobic002G093700--Sobic006G234900 Sobic002G115025 Sobic002G115025 Sobic002G093700--Sobic002G115025 Sobic002G093700--Sobic004G045400 Sobic002G093700--Sobic001G256200 Sobic006G078900 Sobic006G078900 Sobic002G093700--Sobic006G078900 Sobic001G054500--Sobic002G042000 Sobic007G008100 Sobic007G008100 Sobic001G054500--Sobic007G008100 Sobic002G040900 Sobic002G040900 Sobic001G054500--Sobic002G040900 Sobic001G054500--Sobic001G256200 Sobic003G364300 Sobic003G364300 Sobic001G054500--Sobic003G364300 Sobic004G148100 Sobic004G148100 Sobic001G054500--Sobic004G148100 Sobic006G113500 Sobic006G113500 Sobic001G054500--Sobic006G113500 Sobic007G008000 Sobic007G008000 Sobic001G054500--Sobic007G008000 Sobic009G009700 Sobic009G009700 Sobic001G054500--Sobic009G009700 Sobic010G205400 Sobic010G205400 Sobic004G045400--Sobic010G205400 Sobic006G158400 Sobic006G158400 Sobic004G045400--Sobic006G158400 Sobic004G045400--Sobic002G042000 Sobic004G045400--Sobic001G054500 Sobic004G045400--Sobic003G364300 Sobic004G045400--Sobic007G008100 Sobic001G361600 Sobic001G361600 Sobic004G045400--Sobic001G361600 Sobic004G045400--Sobic002G040900 Sobic004G045400--Sobic006G159100 Sobic007G005700 Sobic007G005700 Sobic003G155600--Sobic007G005700 Sobic006G143400 Sobic006G143400 Sobic003G155600--Sobic006G143400 Sobic003G271500 Sobic003G271500 Sobic003G155600--Sobic003G271500 Sobic005G063300 Sobic005G063300 Sobic003G155600--Sobic005G063300 Sobic001G449600 Sobic001G449600 Sobic003G155600--Sobic001G449600 Sobic009G217700 Sobic009G217700 Sobic003G155600--Sobic009G217700 Sobic005G005600 Sobic005G005600 Sobic003G155600--Sobic005G005600 Sobic003G155600--Sobic001G054500 Sobic003G155600--Sobic003G364300 Sobic008G144600--Sobic001G487400 Sobic006G150700 Sobic006G150700 Sobic008G144600--Sobic006G150700 Sobic002G213600 Sobic002G213600 Sobic008G144600--Sobic002G213600 Sobic003G016100 Sobic003G016100 Sobic008G144600--Sobic003G016100 Sobic003G363900 Sobic003G363900 Sobic008G144600--Sobic003G363900 Sobic001G039200 Sobic001G039200 Sobic008G144600--Sobic001G039200 Sobic008G144600--Sobic001G340400 Sobic003G079400 Sobic003G079400 Sobic008G144600--Sobic003G079400 Sobic008G144600--Sobic002G093700 Sobic002G042000--Sobic007G008100 Sobic002G042000--Sobic001G054500 Sobic002G042000--Sobic002G040900 Sobic002G042000--Sobic003G364300 Sobic009G069800 Sobic009G069800 Sobic002G042000--Sobic009G069800 Sobic002G042000--Sobic001G256200 Sobic002G042000--Sobic006G101300 Sobic002G042000--Sobic004G148100 Sobic002G042000--Sobic007G008000
Octagon: transcription factors


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