Gene annotation
Transcriptome id Sobic.006G019200.2
Synonym SbSAUR40, small auxin up RNA, Sb06g001800
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
OsSAUR4 - Auxin-responsive SAUR gene family member, expressed
UniProt A0A1Z5RCI8
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF14
NCBI CDD -
KEGG Orthology K14488; SAUR family protein
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT5G20810 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os02g05050.1 : OsSAUR4 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) Zm00025a012403
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G014000 WRKY64, expressed -
2 Sobic.002G093700 Jacalin-like lectin domain containing protein, putative, expressed -
3 Sobic.001G487400 expressed protein -
4 Sobic.008G144600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.009G209500 RING/U-box superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
6 Sobic.001G340400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -
7 Sobic.001G237900 expansin precursor, putative, expressed -
8 Sobic.002G125000 aquaporin protein, putative, expressed K09872: aquaporin PIP
9 Sobic.002G124500 expansin precursor, putative, expressed -
10 Sobic.001G039200 expressed protein -
11 Sobic.008G128066 - -
12 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
13 Sobic.002G183600 L-ascorbate oxidase precursor, putative, expressed -
14 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
15 Sobic.010G158500 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
17 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
18 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.006G078900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed -
20 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -


Gene co-expression network
sample Sobic006G019200 Sobic006G019200 Sobic005G014000 Sobic005G014000 Sobic006G019200--Sobic005G014000 Sobic002G093700 Sobic002G093700 Sobic006G019200--Sobic002G093700 Sobic001G487400 Sobic001G487400 Sobic006G019200--Sobic001G487400 Sobic008G144600 Sobic008G144600 Sobic006G019200--Sobic008G144600 Sobic009G209500 Sobic009G209500 Sobic006G019200--Sobic009G209500 Sobic001G340400 Sobic001G340400 Sobic006G019200--Sobic001G340400 Sobic001G237900 Sobic001G237900 Sobic006G019200--Sobic001G237900 Sobic002G125000 Sobic002G125000 Sobic006G019200--Sobic002G125000 Sobic002G124500 Sobic002G124500 Sobic006G019200--Sobic002G124500 Sobic005G014000--Sobic006G019200 Sobic001G039200 Sobic001G039200 Sobic005G014000--Sobic001G039200 Sobic005G014000--Sobic008G144600 Sobic005G014000--Sobic001G237900 Sobic010G226400 Sobic010G226400 Sobic005G014000--Sobic010G226400 Sobic005G014000--Sobic002G093700 Sobic005G014000--Sobic001G487400 Sobic005G014000--Sobic001G340400 Sobic010G003600 Sobic010G003600 Sobic005G014000--Sobic010G003600 Sobic002G093700--Sobic001G487400 Sobic008G128066 Sobic008G128066 Sobic002G093700--Sobic008G128066 Sobic002G093700--Sobic006G019200 Sobic007G144501 Sobic007G144501 Sobic002G093700--Sobic007G144501 Sobic006G234900 Sobic006G234900 Sobic002G093700--Sobic006G234900 Sobic002G115025 Sobic002G115025 Sobic002G093700--Sobic002G115025 Sobic004G045400 Sobic004G045400 Sobic002G093700--Sobic004G045400 Sobic001G256200 Sobic001G256200 Sobic002G093700--Sobic001G256200 Sobic006G078900 Sobic006G078900 Sobic002G093700--Sobic006G078900 Sobic001G487400--Sobic008G144600 Sobic001G487400--Sobic002G093700 Sobic001G487400--Sobic006G019200 Sobic001G487400--Sobic004G045400 Sobic001G487400--Sobic008G128066 Sobic001G487400--Sobic009G209500 Sobic001G487400--Sobic001G340400 Sobic001G487400--Sobic007G144501 Sobic001G487400--Sobic001G256200 Sobic008G144600--Sobic001G487400 Sobic006G150700 Sobic006G150700 Sobic008G144600--Sobic006G150700 Sobic002G213600 Sobic002G213600 Sobic008G144600--Sobic002G213600 Sobic003G016100 Sobic003G016100 Sobic008G144600--Sobic003G016100 Sobic003G363900 Sobic003G363900 Sobic008G144600--Sobic003G363900 Sobic008G144600--Sobic001G039200 Sobic008G144600--Sobic001G340400 Sobic003G079400 Sobic003G079400 Sobic008G144600--Sobic003G079400 Sobic008G144600--Sobic002G093700 Sobic009G209500--Sobic001G487400 Sobic009G209500--Sobic002G125000 Sobic009G209500--Sobic006G019200 Sobic009G209500--Sobic002G093700 Sobic001G054500 Sobic001G054500 Sobic009G209500--Sobic001G054500 Sobic009G209500--Sobic004G045400 Sobic003G155600 Sobic003G155600 Sobic009G209500--Sobic003G155600 Sobic009G209500--Sobic008G144600 Sobic002G042000 Sobic002G042000 Sobic009G209500--Sobic002G042000 Sobic001G340400--Sobic001G039200 Sobic001G340400--Sobic008G144600 Sobic001G340400--Sobic001G487400 Sobic001G348300 Sobic001G348300 Sobic001G340400--Sobic001G348300 Sobic001G340400--Sobic006G019200 Sobic001G340400--Sobic005G014000 Sobic001G340400--Sobic006G150700 Sobic001G340400--Sobic002G093700 Sobic001G176300 Sobic001G176300 Sobic001G340400--Sobic001G176300 Sobic001G238400 Sobic001G238400 Sobic001G237900--Sobic001G238400 Sobic010G158500 Sobic010G158500 Sobic001G237900--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic001G237900--Sobic003G053300 Sobic006G158400 Sobic006G158400 Sobic001G237900--Sobic006G158400 Sobic002G425000 Sobic002G425000 Sobic001G237900--Sobic002G425000 Sobic004G202400 Sobic004G202400 Sobic001G237900--Sobic004G202400 Sobic001G304100 Sobic001G304100 Sobic001G237900--Sobic001G304100 Sobic010G063000 Sobic010G063000 Sobic001G237900--Sobic010G063000 Sobic001G237900--Sobic002G213600 Sobic002G125000--Sobic009G209500 Sobic002G125000--Sobic002G093700 Sobic002G125000--Sobic004G045400 Sobic006G159100 Sobic006G159100 Sobic002G125000--Sobic006G159100 Sobic002G125000--Sobic006G019200 Sobic003G364950 Sobic003G364950 Sobic002G125000--Sobic003G364950 Sobic006G101300 Sobic006G101300 Sobic002G125000--Sobic006G101300 Sobic001G265400 Sobic001G265400 Sobic002G125000--Sobic001G265400 Sobic002G125000--Sobic001G054500 Sobic003G053400 Sobic003G053400 Sobic002G124500--Sobic003G053400 SobicK026900 SobicK026900 Sobic002G124500--SobicK026900 Sobic001G508532 Sobic001G508532 Sobic002G124500--Sobic001G508532 Sobic002G124500--Sobic002G425000 Sobic004G348800 Sobic004G348800 Sobic002G124500--Sobic004G348800 Sobic002G124500--Sobic010G158500 Sobic002G124500--Sobic003G053300 Sobic010G212500 Sobic010G212500 Sobic002G124500--Sobic010G212500 Sobic006G202600 Sobic006G202600 Sobic002G124500--Sobic006G202600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.