Gene annotation
Transcriptome id Sobic.001G039200.1
Synonym Sb01g003610
Functional annotation expressed protein
UniProt C5WV58
Pfam PF05097
Panther DB PTHR33257 PTHR33257:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01790 : -
RAP-DB (Rice) LOC_Os01g60940.1 : expressed protein
MaizeGDB (Corn) Zm00025a008755 , Zm00025a045443
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G340400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -
2 Sobic.006G150700 DEF12 - Defensin and Defensin-like DEFL family, expressed -
3 Sobic.008G144600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.001G176300 cytochrome P450, putative, expressed -
5 Sobic.005G014000 WRKY64, expressed -
6 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.001G348300 expressed protein -
8 Sobic.005G063300 Fatty acid reductase 4 FAR4 (At)(PubMedID : 27208977)@male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
9 Sobic.009G035300 expressed protein -
10 Sobic.010G092200 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
11 Sobic.001G487400 expressed protein -
12 Sobic.003G348600 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.004G011100 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.006G019200 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR4 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
15 Sobic.005G080400 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
16 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
17 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
18 Sobic.005G202700 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
19 Sobic.010G161800 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.007G005700 expressed protein -


Gene co-expression network
sample Sobic001G039200 Sobic001G039200 Sobic001G340400 Sobic001G340400 Sobic001G039200--Sobic001G340400 Sobic006G150700 Sobic006G150700 Sobic001G039200--Sobic006G150700 Sobic008G144600 Sobic008G144600 Sobic001G039200--Sobic008G144600 Sobic001G176300 Sobic001G176300 Sobic001G039200--Sobic001G176300 Sobic005G014000 Sobic005G014000 Sobic001G039200--Sobic005G014000 Sobic003G053300 Sobic003G053300 Sobic001G039200--Sobic003G053300 Sobic001G348300 Sobic001G348300 Sobic001G039200--Sobic001G348300 Sobic005G063300 Sobic005G063300 Sobic001G039200--Sobic005G063300 Sobic009G035300 Sobic009G035300 Sobic001G039200--Sobic009G035300 Sobic001G340400--Sobic001G039200 Sobic001G340400--Sobic008G144600 Sobic001G487400 Sobic001G487400 Sobic001G340400--Sobic001G487400 Sobic001G340400--Sobic001G348300 Sobic006G019200 Sobic006G019200 Sobic001G340400--Sobic006G019200 Sobic001G340400--Sobic005G014000 Sobic001G340400--Sobic006G150700 Sobic002G093700 Sobic002G093700 Sobic001G340400--Sobic002G093700 Sobic001G340400--Sobic001G176300 Sobic003G016100 Sobic003G016100 Sobic006G150700--Sobic003G016100 Sobic002G213600 Sobic002G213600 Sobic006G150700--Sobic002G213600 Sobic006G150700--Sobic008G144600 Sobic006G150700--Sobic003G053300 Sobic002G003800 Sobic002G003800 Sobic006G150700--Sobic002G003800 Sobic003G316000 Sobic003G316000 Sobic006G150700--Sobic003G316000 Sobic010G212500 Sobic010G212500 Sobic006G150700--Sobic010G212500 Sobic006G249300 Sobic006G249300 Sobic006G150700--Sobic006G249300 Sobic006G150700--Sobic009G035300 Sobic008G144600--Sobic001G487400 Sobic008G144600--Sobic006G150700 Sobic008G144600--Sobic002G213600 Sobic008G144600--Sobic003G016100 Sobic003G363900 Sobic003G363900 Sobic008G144600--Sobic003G363900 Sobic008G144600--Sobic001G039200 Sobic008G144600--Sobic001G340400 Sobic003G079400 Sobic003G079400 Sobic008G144600--Sobic003G079400 Sobic008G144600--Sobic002G093700 Sobic001G176300--Sobic001G039200 Sobic001G176300--Sobic001G348300 Sobic001G348500 Sobic001G348500 Sobic001G176300--Sobic001G348500 Sobic001G176300--Sobic006G150700 Sobic001G176300--Sobic003G053300 Sobic009G088900 Sobic009G088900 Sobic001G176300--Sobic009G088900 Sobic001G176300--Sobic009G035300 Sobic001G176300--Sobic001G340400 Sobic005G073000 Sobic005G073000 Sobic001G176300--Sobic005G073000 Sobic005G014000--Sobic006G019200 Sobic005G014000--Sobic001G039200 Sobic005G014000--Sobic008G144600 Sobic001G237900 Sobic001G237900 Sobic005G014000--Sobic001G237900 Sobic010G226400 Sobic010G226400 Sobic005G014000--Sobic010G226400 Sobic005G014000--Sobic002G093700 Sobic005G014000--Sobic001G487400 Sobic005G014000--Sobic001G340400 Sobic010G003600 Sobic010G003600 Sobic005G014000--Sobic010G003600 Sobic003G053300--Sobic001G237900 Sobic003G053300--Sobic002G213600 Sobic003G053300--Sobic005G073000 Sobic001G304100 Sobic001G304100 Sobic003G053300--Sobic001G304100 Sobic002G425000 Sobic002G425000 Sobic003G053300--Sobic002G425000 Sobic004G295100 Sobic004G295100 Sobic003G053300--Sobic004G295100 Sobic002G124500 Sobic002G124500 Sobic003G053300--Sobic002G124500 Sobic001G238400 Sobic001G238400 Sobic003G053300--Sobic001G238400 Sobic003G053400 Sobic003G053400 Sobic003G053300--Sobic003G053400 Sobic002G053700 Sobic002G053700 Sobic001G348300--Sobic002G053700 Sobic001G348300--Sobic001G176300 Sobic001G348300--Sobic001G348500 Sobic001G348300--Sobic001G039200 Sobic005G063400 Sobic005G063400 Sobic001G348300--Sobic005G063400 Sobic001G348300--Sobic002G425000 Sobic010G161800 Sobic010G161800 Sobic001G348300--Sobic010G161800 Sobic001G348300--Sobic001G340400 Sobic006G122800 Sobic006G122800 Sobic001G348300--Sobic006G122800 Sobic007G005700 Sobic007G005700 Sobic005G063300--Sobic007G005700 Sobic003G155600 Sobic003G155600 Sobic005G063300--Sobic003G155600 Sobic003G255200 Sobic003G255200 Sobic005G063300--Sobic003G255200 Sobic010G015300 Sobic010G015300 Sobic005G063300--Sobic010G015300 Sobic005G063300--Sobic008G144600 Sobic005G063300--Sobic001G039200 Sobic001G082600 Sobic001G082600 Sobic005G063300--Sobic001G082600 Sobic010G092200 Sobic010G092200 Sobic005G063300--Sobic010G092200 Sobic004G245600 Sobic004G245600 Sobic005G063300--Sobic004G245600 Sobic001G264000 Sobic001G264000 Sobic009G035300--Sobic001G264000 Sobic004G042000 Sobic004G042000 Sobic009G035300--Sobic004G042000 Sobic001G416200 Sobic001G416200 Sobic009G035300--Sobic001G416200 Sobic001G161500 Sobic001G161500 Sobic009G035300--Sobic001G161500 Sobic004G349125 Sobic004G349125 Sobic009G035300--Sobic004G349125 Sobic001G302600 Sobic001G302600 Sobic009G035300--Sobic001G302600 Sobic006G197100 Sobic006G197100 Sobic009G035300--Sobic006G197100 Sobic001G304201 Sobic001G304201 Sobic009G035300--Sobic001G304201 Sobic009G035300--Sobic002G003800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.