Gene annotation
Transcriptome id Sobic.010G092200.1
Synonym SBH1, Sb10g008040
Functional annotation sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5Z728
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF52
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os06g12250.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a042595 , Zm00025a033204 , Zm00025a022034 , Zm00025a049473
Brachypodium KQK01939
Barley HORVU6Hr1G075770.2 , HORVU6Hr1G075770.3 , HORVU6Hr1G075770.1 , HORVU7Hr1G038160.1 , HORVU7Hr1G038160.3 , HORVU7Hr1G038160.2 , HORVU6Hr1G075760.1 , HORVU6Hr1G075760.3 , HORVU6Hr1G075760.2 , HORVU6Hr1G075760.4 , HORVU6Hr1G075810.2 , HORVU6Hr1G075810.1
Wheat TraesCS6D02G286000 , TraesCS6A02G306800 , TraesCS6A02G306800 , TraesCS7B02G092200 , TraesCS7D02G188000 , TraesCS7A02G186900 , TraesCS6B02G335400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
2 Sobic.006G249300 expressed protein -
3 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
4 Sobic.004G217800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
5 Sobic.007G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed -
6 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -
7 Sobic.005G063300 Fatty acid reductase 4 FAR4 (At)(PubMedID : 27208977)@male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
8 Sobic.007G005700 expressed protein -
9 Sobic.006G143400 expressed protein -
10 Sobic.006G150700 DEF12 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.010G015300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
12 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.001G139100 expressed protein -
14 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
15 Sobic.001G039200 expressed protein -
16 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
17 Sobic.003G255200 expressed protein -
18 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
19 Sobic.009G217700 - -
20 Sobic.009G229000 expressed protein -


Gene co-expression network
sample Sobic010G092200 Sobic010G092200 Sobic010G259600 Sobic010G259600 Sobic010G092200--Sobic010G259600 Sobic006G249300 Sobic006G249300 Sobic010G092200--Sobic006G249300 Sobic001G449600 Sobic001G449600 Sobic010G092200--Sobic001G449600 Sobic004G217800 Sobic004G217800 Sobic010G092200--Sobic004G217800 Sobic007G166000 Sobic007G166000 Sobic010G092200--Sobic007G166000 Sobic003G155600 Sobic003G155600 Sobic010G092200--Sobic003G155600 Sobic005G063300 Sobic005G063300 Sobic010G092200--Sobic005G063300 Sobic007G005700 Sobic007G005700 Sobic010G092200--Sobic007G005700 Sobic006G143400 Sobic006G143400 Sobic010G092200--Sobic006G143400 Sobic009G159400 Sobic009G159400 Sobic010G259600--Sobic009G159400 Sobic003G352300 Sobic003G352300 Sobic010G259600--Sobic003G352300 Sobic009G234100 Sobic009G234100 Sobic010G259600--Sobic009G234100 Sobic002G125700 Sobic002G125700 Sobic010G259600--Sobic002G125700 Sobic007G087200 Sobic007G087200 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic001G435000 Sobic001G435000 Sobic010G259600--Sobic001G435000 Sobic003G255200 Sobic003G255200 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic006G249300--Sobic001G169500 Sobic004G100700 Sobic004G100700 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic006G249300--Sobic005G011300 Sobic003G086600 Sobic003G086600 Sobic006G249300--Sobic003G086600 Sobic006G249300--Sobic010G259600 Sobic003G084400 Sobic003G084400 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400 Sobic009G217700 Sobic009G217700 Sobic001G449600--Sobic009G217700 Sobic001G449600--Sobic003G255200 Sobic005G005600 Sobic005G005600 Sobic001G449600--Sobic005G005600 Sobic003G319700 Sobic003G319700 Sobic001G449600--Sobic003G319700 Sobic001G449600--Sobic007G166000 Sobic001G449600--Sobic002G125700 Sobic002G034800 Sobic002G034800 Sobic001G449600--Sobic002G034800 Sobic003G255500 Sobic003G255500 Sobic001G449600--Sobic003G255500 Sobic009G016300 Sobic009G016300 Sobic001G449600--Sobic009G016300 Sobic004G217800--Sobic006G249300 Sobic004G217800--Sobic001G449600 Sobic004G217800--Sobic009G016300 Sobic004G217800--Sobic003G255200 Sobic007G057000 Sobic007G057000 Sobic004G217800--Sobic007G057000 Sobic010G136000 Sobic010G136000 Sobic004G217800--Sobic010G136000 Sobic004G217800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic004G217800--Sobic003G062600 Sobic001G476500 Sobic001G476500 Sobic004G217800--Sobic001G476500 Sobic007G166000--Sobic001G449600 Sobic009G164600 Sobic009G164600 Sobic007G166000--Sobic009G164600 Sobic007G166000--Sobic005G005600 Sobic009G139700 Sobic009G139700 Sobic007G166000--Sobic009G139700 Sobic007G166000--Sobic010G259600 Sobic007G166000--Sobic006G143400 Sobic007G166000--Sobic009G217700 Sobic007G166000--Sobic009G231000 Sobic007G166000--Sobic007G005700 Sobic003G155600--Sobic007G005700 Sobic003G155600--Sobic006G143400 Sobic003G271500 Sobic003G271500 Sobic003G155600--Sobic003G271500 Sobic003G155600--Sobic005G063300 Sobic003G155600--Sobic001G449600 Sobic003G155600--Sobic009G217700 Sobic003G155600--Sobic005G005600 Sobic001G054500 Sobic001G054500 Sobic003G155600--Sobic001G054500 Sobic003G364300 Sobic003G364300 Sobic003G155600--Sobic003G364300 Sobic005G063300--Sobic007G005700 Sobic005G063300--Sobic003G155600 Sobic005G063300--Sobic003G255200 Sobic010G015300 Sobic010G015300 Sobic005G063300--Sobic010G015300 Sobic008G144600 Sobic008G144600 Sobic005G063300--Sobic008G144600 Sobic001G039200 Sobic001G039200 Sobic005G063300--Sobic001G039200 Sobic001G082600 Sobic001G082600 Sobic005G063300--Sobic001G082600 Sobic005G063300--Sobic010G092200 Sobic004G245600 Sobic004G245600 Sobic005G063300--Sobic004G245600 Sobic007G005700--Sobic005G063300 Sobic007G005700--Sobic009G139700 Sobic007G005700--Sobic002G125700 Sobic007G005700--Sobic001G449600 Sobic007G005700--Sobic009G217700 Sobic007G005700--Sobic003G255200 Sobic007G005700--Sobic007G166000 Sobic005G013600 Sobic005G013600 Sobic007G005700--Sobic005G013600 Sobic007G005700--Sobic003G155600 Sobic006G143400--Sobic005G005600 Sobic003G041600 Sobic003G041600 Sobic006G143400--Sobic003G041600 Sobic006G143400--Sobic009G159400 Sobic006G143400--Sobic010G259600 Sobic008G185400 Sobic008G185400 Sobic006G143400--Sobic008G185400 Sobic004G075000 Sobic004G075000 Sobic006G143400--Sobic004G075000 Sobic006G143400--Sobic003G364300 Sobic006G143400--Sobic007G166000 Sobic006G143400--Sobic001G449600
Octagon: transcription factors


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