Gene annotation
Transcriptome id Sobic.006G078900.1
Synonym Sb06g016570, TET3
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
tetraspanin family protein, putative, expressed
UniProt C5YGE8
Pfam PF00335
Panther DB PTHR32191 PTHR32191:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G45600 : tetraspanin3
RAP-DB (Rice) LOC_Os05g03140.1 : tetraspanin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038197 , Zm00025a051637
Brachypodium KQK07839 , KQK02441 , KQK12515
Barley -
Wheat TraesCS1D02G063000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G204700 expressed protein -
2 Sobic.008G128066 - -
3 Sobic.008G128200 - -
4 Sobic.002G090900 cytochrome P450, putative, expressed -
5 Sobic.010G158500 Zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.002G093700 Jacalin-like lectin domain containing protein, putative, expressed -
7 Sobic.002G105300 SCP-like extracellular protein, expressed -
8 Sobic.002G124500 expansin precursor, putative, expressed -
9 Sobic.003G364200 glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.008G144600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.005G215400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
12 Sobic.010G045500 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
13 Sobic.005G163800 laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.008G127933 - -
15 Sobic.001G237900 expansin precursor, putative, expressed -
16 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.007G144501 - -
18 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
19 Sobic.001G487400 expressed protein -
20 Sobic.006G102650 - -


Gene co-expression network
sample Sobic006G078900 Sobic006G078900 Sobic007G204700 Sobic007G204700 Sobic006G078900--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic006G078900--Sobic008G128066 Sobic008G128200 Sobic008G128200 Sobic006G078900--Sobic008G128200 Sobic002G090900 Sobic002G090900 Sobic006G078900--Sobic002G090900 Sobic010G158500 Sobic010G158500 Sobic006G078900--Sobic010G158500 Sobic002G093700 Sobic002G093700 Sobic006G078900--Sobic002G093700 Sobic002G105300 Sobic002G105300 Sobic006G078900--Sobic002G105300 Sobic002G124500 Sobic002G124500 Sobic006G078900--Sobic002G124500 Sobic003G364200 Sobic003G364200 Sobic006G078900--Sobic003G364200 Sobic006G158400 Sobic006G158400 Sobic007G204700--Sobic006G158400 Sobic001G462700 Sobic001G462700 Sobic007G204700--Sobic001G462700 Sobic007G204700--Sobic010G158500 Sobic008G127933 Sobic008G127933 Sobic007G204700--Sobic008G127933 Sobic001G237900 Sobic001G237900 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic004G202400 Sobic004G202400 Sobic007G204700--Sobic004G202400 Sobic007G204700--Sobic008G128200 Sobic004G348800 Sobic004G348800 Sobic007G204700--Sobic004G348800 Sobic008G128066--Sobic008G127933 Sobic008G128066--Sobic007G204700 Sobic008G128066--Sobic008G128200 Sobic008G128066--Sobic006G078900 Sobic008G128066--Sobic003G364200 Sobic008G128066--Sobic002G093700 Sobic005G066100 Sobic005G066100 Sobic008G128066--Sobic005G066100 Sobic002G425000 Sobic002G425000 Sobic008G128066--Sobic002G425000 Sobic008G128066--Sobic001G237900 Sobic008G128200--Sobic007G204700 Sobic008G128200--Sobic008G128066 Sobic010G045500 Sobic010G045500 Sobic008G128200--Sobic010G045500 Sobic008G128200--Sobic003G364200 Sobic008G128200--Sobic006G078900 Sobic008G128200--Sobic008G127933 Sobic008G128200--Sobic005G215400 Sobic005G069800 Sobic005G069800 Sobic008G128200--Sobic005G069800 Sobic008G128200--Sobic005G066100 Sobic005G163800 Sobic005G163800 Sobic002G090900--Sobic005G163800 Sobic006G079300 Sobic006G079300 Sobic002G090900--Sobic006G079300 Sobic002G090900--Sobic002G124500 Sobic002G090900--Sobic006G078900 Sobic006G170600 Sobic006G170600 Sobic002G090900--Sobic006G170600 Sobic001G242100 Sobic001G242100 Sobic002G090900--Sobic001G242100 Sobic007G085500 Sobic007G085500 Sobic002G090900--Sobic007G085500 Sobic001G237800 Sobic001G237800 Sobic002G090900--Sobic001G237800 Sobic002G412600 Sobic002G412600 Sobic002G090900--Sobic002G412600 Sobic010G158500--Sobic001G237900 Sobic010G158500--Sobic006G158400 Sobic010G158500--Sobic007G204700 Sobic010G158500--Sobic002G124500 SobicK026900 SobicK026900 Sobic010G158500--SobicK026900 Sobic010G063000 Sobic010G063000 Sobic010G158500--Sobic010G063000 Sobic010G158500--Sobic004G202400 Sobic010G158500--Sobic008G127933 Sobic010G158500--Sobic005G066100 Sobic001G487400 Sobic001G487400 Sobic002G093700--Sobic001G487400 Sobic002G093700--Sobic008G128066 Sobic006G019200 Sobic006G019200 Sobic002G093700--Sobic006G019200 Sobic007G144501 Sobic007G144501 Sobic002G093700--Sobic007G144501 Sobic006G234900 Sobic006G234900 Sobic002G093700--Sobic006G234900 Sobic002G115025 Sobic002G115025 Sobic002G093700--Sobic002G115025 Sobic004G045400 Sobic004G045400 Sobic002G093700--Sobic004G045400 Sobic001G256200 Sobic001G256200 Sobic002G093700--Sobic001G256200 Sobic002G093700--Sobic006G078900 Sobic004G180700 Sobic004G180700 Sobic002G105300--Sobic004G180700 Sobic006G202600 Sobic006G202600 Sobic002G105300--Sobic006G202600 Sobic010G196000 Sobic010G196000 Sobic002G105300--Sobic010G196000 Sobic004G301600 Sobic004G301600 Sobic002G105300--Sobic004G301600 Sobic004G295100 Sobic004G295100 Sobic002G105300--Sobic004G295100 Sobic007G090469 Sobic007G090469 Sobic002G105300--Sobic007G090469 Sobic002G213600 Sobic002G213600 Sobic002G105300--Sobic002G213600 Sobic002G105300--Sobic005G215400 Sobic002G105300--Sobic004G348800 Sobic003G053400 Sobic003G053400 Sobic002G124500--Sobic003G053400 Sobic002G124500--SobicK026900 Sobic001G508532 Sobic001G508532 Sobic002G124500--Sobic001G508532 Sobic002G124500--Sobic002G425000 Sobic002G124500--Sobic004G348800 Sobic002G124500--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic002G124500--Sobic003G053300 Sobic010G212500 Sobic010G212500 Sobic002G124500--Sobic010G212500 Sobic002G124500--Sobic006G202600 Sobic003G364200--Sobic008G128066 Sobic003G364200--Sobic008G128200 Sobic003G364200--Sobic007G204700 Sobic003G364200--Sobic005G215400 Sobic003G364200--Sobic010G045500 Sobic004G322800 Sobic004G322800 Sobic003G364200--Sobic004G322800 Sobic003G364200--Sobic008G127933 Sobic005G160700 Sobic005G160700 Sobic003G364200--Sobic005G160700 Sobic006G122800 Sobic006G122800 Sobic003G364200--Sobic006G122800
Octagon: transcription factors


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