Gene annotation
Transcriptome id Sobic.001G351200.1
Synonym ATMC1, MCP1B, Sb01g033610, ATMCPB1, LOL3, AMC1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ICE-like protease p20 domain containing protein, putative, expressed
UniProt A0A1Z5S9H4
Pfam PF00656
Panther DB PTHR31773 PTHR31773:SF3
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G02170 : metacaspase 1
RAP-DB (Rice) LOC_Os03g27170.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052100 , Zm00025a002724 , Zm00025a052098
Brachypodium KQK21439 , KQK21440
Barley HORVU1Hr1G071130.7 , HORVU1Hr1G071130.6 , HORVU1Hr1G071130.4 , HORVU1Hr1G071130.2 , HORVU1Hr1G071130.1 , HORVU3Hr1G020830.2 , HORVU3Hr1G020830.1 , HORVU1Hr1G071130.9 , HORVU1Hr1G071130.8 , HORVU1Hr1G071130.5
Wheat TraesCS3B02G133900 , TraesCS1D02G442100 , TraesCS1A02G432800 , TraesCS1B02G468600 , TraesCS3A02G114300 , TraesCS3D02G116800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G043200 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
2 Sobic.002G096800 OsFBX209 - F-box domain containing protein, expressed -
3 Sobic.001G086100 - -
4 Sobic.004G096000 - -
5 Sobic.004G162600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
6 Sobic.004G087900 - -
7 Sobic.002G334900 S-domain receptor-like protein kinase, putative, expressed -
8 Sobic.003G315900 - -
9 Sobic.001G169000 expressed protein -
10 Sobic.003G352750 - -
11 Sobic.009G106300 - -
12 Sobic.007G180800 - -
13 Sobic.004G293600 OsFBX15 - F-box domain containing protein, expressed -
14 Sobic.003G130100 expressed protein -
15 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
16 Sobic.010G251800 DUF617 domain containing protein, expressed -
17 Sobic.002G345100 expressed protein -
18 Sobic.003G250340 - K07976: Rab family, other
19 Sobic.006G019000 expressed protein -
20 Sobic.002G046400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K18054: 2'-deoxymugineic-acid 2'-dioxygenase / mugineic-acid 3-dioxygenase


Gene co-expression network
sample Sobic001G351200 Sobic001G351200 Sobic009G043200 Sobic009G043200 Sobic001G351200--Sobic009G043200 Sobic002G096800 Sobic002G096800 Sobic001G351200--Sobic002G096800 Sobic001G086100 Sobic001G086100 Sobic001G351200--Sobic001G086100 Sobic004G096000 Sobic004G096000 Sobic001G351200--Sobic004G096000 Sobic004G162600 Sobic004G162600 Sobic001G351200--Sobic004G162600 Sobic004G087900 Sobic004G087900 Sobic001G351200--Sobic004G087900 Sobic002G334900 Sobic002G334900 Sobic001G351200--Sobic002G334900 Sobic003G315900 Sobic003G315900 Sobic001G351200--Sobic003G315900 Sobic001G169000 Sobic001G169000 Sobic001G351200--Sobic001G169000 Sobic009G043200--Sobic001G086100 Sobic009G043200--Sobic001G169000 Sobic009G043200--Sobic004G162600 Sobic009G043200--Sobic004G096000 Sobic009G043200--Sobic001G351200 Sobic004G293600 Sobic004G293600 Sobic009G043200--Sobic004G293600 Sobic009G043200--Sobic002G334900 Sobic003G250340 Sobic003G250340 Sobic009G043200--Sobic003G250340 Sobic009G187900 Sobic009G187900 Sobic009G043200--Sobic009G187900 Sobic002G096800--Sobic001G351200 Sobic002G096800--Sobic009G043200 Sobic002G096800--Sobic004G087900 Sobic002G096800--Sobic004G096000 Sobic002G096800--Sobic004G162600 Sobic002G096800--Sobic001G086100 Sobic001G171850 Sobic001G171850 Sobic002G096800--Sobic001G171850 Sobic009G106300 Sobic009G106300 Sobic002G096800--Sobic009G106300 Sobic002G096800--Sobic003G315900 Sobic001G086100--Sobic004G293600 Sobic002G345100 Sobic002G345100 Sobic001G086100--Sobic002G345100 Sobic002G046400 Sobic002G046400 Sobic001G086100--Sobic002G046400 Sobic005G025500 Sobic005G025500 Sobic001G086100--Sobic005G025500 Sobic003G002800 Sobic003G002800 Sobic001G086100--Sobic003G002800 Sobic004G328800 Sobic004G328800 Sobic001G086100--Sobic004G328800 Sobic006G144900 Sobic006G144900 Sobic001G086100--Sobic006G144900 Sobic009G142600 Sobic009G142600 Sobic001G086100--Sobic009G142600 Sobic005G014600 Sobic005G014600 Sobic001G086100--Sobic005G014600 Sobic003G352750 Sobic003G352750 Sobic004G096000--Sobic003G352750 Sobic009G162550 Sobic009G162550 Sobic004G096000--Sobic009G162550 Sobic004G096000--Sobic009G043200 Sobic004G096000--Sobic004G162600 Sobic004G096000--Sobic001G086100 Sobic004G096000--Sobic009G187900 Sobic001G336600 Sobic001G336600 Sobic004G096000--Sobic001G336600 Sobic004G096000--Sobic001G169000 Sobic003G017300 Sobic003G017300 Sobic004G096000--Sobic003G017300 Sobic004G162600--Sobic009G187900 Sobic004G205400 Sobic004G205400 Sobic004G162600--Sobic004G205400 Sobic006G260101 Sobic006G260101 Sobic004G162600--Sobic006G260101 Sobic004G162600--Sobic003G250340 Sobic004G162600--Sobic009G043200 Sobic010G196200 Sobic010G196200 Sobic004G162600--Sobic010G196200 Sobic005G116601 Sobic005G116601 Sobic004G162600--Sobic005G116601 Sobic004G162600--Sobic002G334900 Sobic004G162600--Sobic004G096000 Sobic004G087900--Sobic003G315900 Sobic004G087900--Sobic009G106300 Sobic009G005750 Sobic009G005750 Sobic004G087900--Sobic009G005750 Sobic010G251800 Sobic010G251800 Sobic004G087900--Sobic010G251800 Sobic001G227601 Sobic001G227601 Sobic004G087900--Sobic001G227601 Sobic006G019000 Sobic006G019000 Sobic004G087900--Sobic006G019000 Sobic002G295550 Sobic002G295550 Sobic004G087900--Sobic002G295550 Sobic003G232200 Sobic003G232200 Sobic004G087900--Sobic003G232200 Sobic004G087900--Sobic003G017300 Sobic002G334900--Sobic010G196200 Sobic002G334900--Sobic003G250340 Sobic002G334900--Sobic001G086100 Sobic002G334900--Sobic009G187900 Sobic008G045300 Sobic008G045300 Sobic002G334900--Sobic008G045300 Sobic002G334900--Sobic004G328800 Sobic002G334900--Sobic004G293600 Sobic002G334900--Sobic004G162600 Sobic002G334900--Sobic001G169000 Sobic003G315900--Sobic004G087900 Sobic003G315900--Sobic010G251800 Sobic003G315900--Sobic001G227601 Sobic003G315900--Sobic009G106300 Sobic003G315900--Sobic006G019000 Sobic003G315900--Sobic003G232200 Sobic003G315900--Sobic009G005750 Sobic003G315900--Sobic002G295550 Sobic006G153550 Sobic006G153550 Sobic003G315900--Sobic006G153550 Sobic001G169000--Sobic004G293600 Sobic001G169000--Sobic001G086100 Sobic003G333150 Sobic003G333150 Sobic001G169000--Sobic003G333150 Sobic001G169000--Sobic009G043200 Sobic001G169000--Sobic008G045300 Sobic009G203600 Sobic009G203600 Sobic001G169000--Sobic009G203600 Sobic001G169000--Sobic006G144900 Sobic003G130650 Sobic003G130650 Sobic001G169000--Sobic003G130650 Sobic001G169000--Sobic002G345100
Octagon: transcription factors


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