Gene annotation
Transcriptome id Sobic.001G378500.1
Synonym TL2, Sb01g035920, ATL2
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X0R2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF119
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G16720 : TOXICOS EN LEVADURA 2
RAP-DB (Rice) LOC_Os03g22080.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a052412
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G228600 - -
2 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.002G025500 expressed protein -
4 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e
5 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
6 Sobic.004G346300 expressed protein -
7 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
8 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
9 Sobic.009G106100 GCRP9 - Glycine and cysteine rich family protein precursor, expressed -
10 Sobic.005G197500 NBS-LRR disease resistance protein, putative, expressed -
11 Sobic.005G060200 cytochrome P450, putative, expressed -
12 Sobic.002G028632 - -
13 Sobic.010G268700 expansin precursor, putative, expressed -
14 Sobic.004G009200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
15 Sobic.002G391900 peroxidase precursor, putative, expressed -
16 Sobic.005G069500 OsWAK92 - OsWAK receptor-like protein kinase, expressed -
17 Sobic.005G162400 GATA transcription factor 25, putative, expressed -
18 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
19 Sobic.005G197400 NBS-LRR disease resistance protein, putative, expressed -
20 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G378500 Sobic001G378500 Sobic004G228600 Sobic004G228600 Sobic001G378500--Sobic004G228600 Sobic003G443700 Sobic003G443700 Sobic001G378500--Sobic003G443700 Sobic002G025500 Sobic002G025500 Sobic001G378500--Sobic002G025500 Sobic004G002901 Sobic004G002901 Sobic001G378500--Sobic004G002901 Sobic007G064500 Sobic007G064500 Sobic001G378500--Sobic007G064500 Sobic004G346300 Sobic004G346300 Sobic001G378500--Sobic004G346300 Sobic007G177400 Sobic007G177400 Sobic001G378500--Sobic007G177400 Sobic007G111800 Sobic007G111800 Sobic001G378500--Sobic007G111800 Sobic009G106100 Sobic009G106100 Sobic001G378500--Sobic009G106100 Sobic004G228600--Sobic001G378500 Sobic004G228600--Sobic004G002901 Sobic005G197500 Sobic005G197500 Sobic004G228600--Sobic005G197500 Sobic005G066366 Sobic005G066366 Sobic004G228600--Sobic005G066366 Sobic005G197400 Sobic005G197400 Sobic004G228600--Sobic005G197400 Sobic010G268700 Sobic010G268700 Sobic004G228600--Sobic010G268700 Sobic005G060200 Sobic005G060200 Sobic004G228600--Sobic005G060200 Sobic004G009200 Sobic004G009200 Sobic004G228600--Sobic004G009200 Sobic005G202800 Sobic005G202800 Sobic004G228600--Sobic005G202800 Sobic003G357700 Sobic003G357700 Sobic003G443700--Sobic003G357700 Sobic003G443700--Sobic004G346300 Sobic005G216400 Sobic005G216400 Sobic003G443700--Sobic005G216400 Sobic002G178101 Sobic002G178101 Sobic003G443700--Sobic002G178101 Sobic003G443700--Sobic005G060200 Sobic003G443700--Sobic002G025500 Sobic003G443700--Sobic007G177400 Sobic006G121000 Sobic006G121000 Sobic003G443700--Sobic006G121000 Sobic002G028632 Sobic002G028632 Sobic003G443700--Sobic002G028632 Sobic002G025500--Sobic003G443700 Sobic002G025500--Sobic004G346300 Sobic002G025500--Sobic003G357700 Sobic002G025500--Sobic010G268700 Sobic002G366200 Sobic002G366200 Sobic002G025500--Sobic002G366200 Sobic002G025500--Sobic005G060200 Sobic002G025500--Sobic005G216400 Sobic002G025500--Sobic007G177400 Sobic002G025500--Sobic007G111800 Sobic004G002901--Sobic005G060200 Sobic004G002901--Sobic005G197500 Sobic004G002901--Sobic010G268700 Sobic004G002901--Sobic004G346300 Sobic001G271300 Sobic001G271300 Sobic004G002901--Sobic001G271300 Sobic004G002901--Sobic007G111800 Sobic007G212000 Sobic007G212000 Sobic004G002901--Sobic007G212000 Sobic010G245400 Sobic010G245400 Sobic004G002901--Sobic010G245400 Sobic004G002901--Sobic003G443700 Sobic007G064500--Sobic007G177400 Sobic007G064500--Sobic002G366200 Sobic007G064500--Sobic002G028632 Sobic005G177100 Sobic005G177100 Sobic007G064500--Sobic005G177100 Sobic007G064500--Sobic002G025500 Sobic007G064500--Sobic003G443700 Sobic007G064500--Sobic001G378500 Sobic007G064500--Sobic004G346300 Sobic007G064500--Sobic003G357700 Sobic004G346300--Sobic003G443700 Sobic004G346300--Sobic003G357700 Sobic004G346300--Sobic005G216400 Sobic004G346300--Sobic005G060200 Sobic004G346300--Sobic007G177400 Sobic004G346300--Sobic004G002901 Sobic004G346300--Sobic007G212000 Sobic003G023600 Sobic003G023600 Sobic004G346300--Sobic003G023600 Sobic004G346300--Sobic002G025500 Sobic007G177400--Sobic003G357700 Sobic007G177400--Sobic002G366200 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G177400--Sobic007G064500 Sobic007G177400--Sobic002G028632 Sobic007G177400--Sobic005G216400 Sobic007G177400--Sobic003G023600 Sobic007G177400--Sobic002G025500 Sobic006G097900 Sobic006G097900 Sobic007G111800--Sobic006G097900 Sobic007G015000 Sobic007G015000 Sobic007G111800--Sobic007G015000 Sobic007G111800--Sobic010G268700 Sobic007G111800--Sobic001G271300 Sobic007G111800--Sobic007G212000 Sobic001G293100 Sobic001G293100 Sobic007G111800--Sobic001G293100 Sobic005G106300 Sobic005G106300 Sobic007G111800--Sobic005G106300 Sobic010G152500 Sobic010G152500 Sobic007G111800--Sobic010G152500 Sobic003G083800 Sobic003G083800 Sobic007G111800--Sobic003G083800 Sobic009G106100--Sobic003G083800 Sobic009G106100--Sobic010G152500 Sobic009G106100--Sobic004G009200 Sobic003G382200 Sobic003G382200 Sobic009G106100--Sobic003G382200 Sobic009G106100--Sobic005G106300 Sobic009G106100--Sobic007G111800 Sobic002G391900 Sobic002G391900 Sobic009G106100--Sobic002G391900 Sobic005G216600 Sobic005G216600 Sobic009G106100--Sobic005G216600 Sobic009G106100--Sobic005G197400
Octagon: transcription factors


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