Gene annotation
Transcriptome id Sobic.005G162400.2
Synonym Sb05g022380, TIFY1, ZIM, GATA25
Functional annotation GATA transcription factor 25, putative, expressed
UniProt A0A1Z5RJ01
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF180
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G24470 : GATA-type zinc finger protein with TIFY domain
RAP-DB (Rice) LOC_Os03g47970.2 : GATA transcription factor 25, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
2 Sobic.002G178101 - -
3 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.007G042600 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
5 Sobic.006G015300 expressed protein -
6 Sobic.004G346300 expressed protein -
7 Sobic.002G178000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
8 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
9 Sobic.005G216400 plant protein of unknown function domain containing protein, expressed -
10 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
11 Sobic.005G060200 cytochrome P450, putative, expressed -
12 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
13 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e
14 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
15 Sobic.005G105700 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
16 Sobic.003G419200 xylanase inhibitor, putative, expressed -
17 Sobic.002G178200 - -
18 Sobic.002G028632 - -
19 Sobic.006G121000 purine permease, putative, expressed -
20 Sobic.001G378500 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic005G162400 Sobic005G162400 Sobic005G220300 Sobic005G220300 Sobic005G162400--Sobic005G220300 Sobic002G178101 Sobic002G178101 Sobic005G162400--Sobic002G178101 Sobic003G443700 Sobic003G443700 Sobic005G162400--Sobic003G443700 Sobic007G042600 Sobic007G042600 Sobic005G162400--Sobic007G042600 Sobic006G015300 Sobic006G015300 Sobic005G162400--Sobic006G015300 Sobic004G346300 Sobic004G346300 Sobic005G162400--Sobic004G346300 Sobic002G178000 Sobic002G178000 Sobic005G162400--Sobic002G178000 Sobic007G177400 Sobic007G177400 Sobic005G162400--Sobic007G177400 Sobic005G216400 Sobic005G216400 Sobic005G162400--Sobic005G216400 Sobic005G220300--Sobic005G162400 Sobic005G220300--Sobic002G178101 Sobic005G220300--Sobic002G178000 Sobic005G220300--Sobic003G443700 Sobic005G220300--Sobic005G216400 Sobic005G060200 Sobic005G060200 Sobic005G220300--Sobic005G060200 Sobic003G357700 Sobic003G357700 Sobic005G220300--Sobic003G357700 Sobic005G220300--Sobic004G346300 Sobic006G121000 Sobic006G121000 Sobic005G220300--Sobic006G121000 Sobic002G178101--Sobic005G220300 Sobic002G178101--Sobic005G216400 Sobic002G178101--Sobic006G121000 Sobic002G178200 Sobic002G178200 Sobic002G178101--Sobic002G178200 Sobic002G178101--Sobic003G443700 Sobic002G178101--Sobic005G060200 Sobic002G178101--Sobic003G357700 Sobic002G178101--Sobic002G178000 Sobic002G178101--Sobic005G162400 Sobic003G443700--Sobic003G357700 Sobic003G443700--Sobic004G346300 Sobic003G443700--Sobic005G216400 Sobic003G443700--Sobic002G178101 Sobic003G443700--Sobic005G060200 Sobic002G025500 Sobic002G025500 Sobic003G443700--Sobic002G025500 Sobic003G443700--Sobic007G177400 Sobic003G443700--Sobic006G121000 Sobic002G028632 Sobic002G028632 Sobic003G443700--Sobic002G028632 Sobic007G042600--Sobic005G162400 Sobic008G168800 Sobic008G168800 Sobic007G042600--Sobic008G168800 Sobic003G419200 Sobic003G419200 Sobic007G042600--Sobic003G419200 Sobic007G042600--Sobic005G220300 Sobic007G042600--Sobic007G177400 Sobic007G042600--Sobic003G443700 Sobic007G042600--Sobic002G178101 Sobic007G042600--Sobic002G028632 Sobic007G042600--Sobic006G015300 Sobic005G105700 Sobic005G105700 Sobic006G015300--Sobic005G105700 Sobic006G015300--Sobic005G162400 Sobic006G015300--Sobic007G177400 Sobic006G015300--Sobic002G178200 Sobic005G202800 Sobic005G202800 Sobic006G015300--Sobic005G202800 Sobic004G002901 Sobic004G002901 Sobic006G015300--Sobic004G002901 Sobic006G015300--Sobic005G220300 Sobic006G015300--Sobic002G178101 Sobic006G015300--Sobic003G443700 Sobic004G346300--Sobic003G443700 Sobic004G346300--Sobic003G357700 Sobic004G346300--Sobic005G216400 Sobic004G346300--Sobic005G060200 Sobic004G346300--Sobic007G177400 Sobic004G346300--Sobic004G002901 Sobic007G212000 Sobic007G212000 Sobic004G346300--Sobic007G212000 Sobic003G023600 Sobic003G023600 Sobic004G346300--Sobic003G023600 Sobic004G346300--Sobic002G025500 Sobic002G178000--Sobic002G178101 Sobic002G178000--Sobic005G220300 Sobic002G178000--Sobic005G216400 Sobic002G178000--Sobic005G162400 Sobic002G178000--Sobic006G121000 Sobic002G178000--Sobic003G443700 Sobic002G178000--Sobic005G060200 Sobic002G178000--Sobic003G357700 Sobic002G178000--Sobic002G178200 Sobic007G177400--Sobic003G357700 Sobic002G366200 Sobic002G366200 Sobic007G177400--Sobic002G366200 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G064500 Sobic007G064500 Sobic007G177400--Sobic007G064500 Sobic007G177400--Sobic002G028632 Sobic007G177400--Sobic005G216400 Sobic007G177400--Sobic003G023600 Sobic007G177400--Sobic002G025500 Sobic005G216400--Sobic003G357700 Sobic005G216400--Sobic002G178101 Sobic008G105800 Sobic008G105800 Sobic005G216400--Sobic008G105800 Sobic005G216400--Sobic006G121000 Sobic005G216400--Sobic007G212000 Sobic005G216400--Sobic005G060200 Sobic005G216400--Sobic003G443700 Sobic005G216400--Sobic002G178200 Sobic005G216400--Sobic004G346300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.