Gene annotation
Transcriptome id Sobic.007G042600.1
Synonym P-glycoprotein, ABCB1, Sb07g003510, SbPGP19, ATPGP1, PGP1
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments" (PubMedID : 20528920)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1Z5R7Z6
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF193
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G28860 : ATP binding cassette subfamily B19
RAP-DB (Rice) LOC_Os08g05690.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a055190
Brachypodium KQJ95404
Barley HORVU7Hr1G071870.4 , HORVU7Hr1G071870.5 , HORVU7Hr1G071870.7 , HORVU7Hr1G071870.1 , HORVU7Hr1G071870.2 , HORVU7Hr1G071870.3 , HORVU7Hr1G071870.8 , HORVU7Hr1G071870.9 , HORVU7Hr1G071870.29 , HORVU7Hr1G071870.26 , HORVU7Hr1G071870.25 , HORVU7Hr1G071870.24 , HORVU7Hr1G071870.23 , HORVU7Hr1G071870.22 , HORVU7Hr1G071870.21 , HORVU7Hr1G071870.20 , HORVU7Hr1G071870.38 , HORVU7Hr1G071870.39 , HORVU7Hr1G071870.34 , HORVU7Hr1G071870.35 , HORVU7Hr1G071870.36 , HORVU7Hr1G071870.37 , HORVU7Hr1G071870.30 , HORVU7Hr1G071870.31 , HORVU7Hr1G071870.32 , HORVU7Hr1G071870.33 , HORVU7Hr1G071870.16 , HORVU7Hr1G071870.17 , HORVU7Hr1G071870.10 , HORVU7Hr1G071870.11 , HORVU7Hr1G071870.18 , HORVU7Hr1G071870.19 , HORVU7Hr1G071870.28 , HORVU7Hr1G071870.27
Wheat TraesCS7B02G203400 , TraesCS7A02G303200 , TraesCS7D02G298600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G162400 GATA transcription factor 25, putative, expressed -
2 Sobic.008G168800 Jacalin-like lectin domain containing protein, putative, expressed -
3 Sobic.003G419200 xylanase inhibitor, putative, expressed -
4 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
5 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
6 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.002G178101 - -
8 Sobic.002G028632 - -
9 Sobic.006G015300 expressed protein -
10 Sobic.010G013000 interacting protein of DMI3, putative, expressed -
11 Sobic.005G105700 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
12 Sobic.004G346300 expressed protein -
13 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e
14 Sobic.005G216400 plant protein of unknown function domain containing protein, expressed -
15 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
16 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.005G060200 cytochrome P450, putative, expressed -
18 Sobic.002G178200 - -
19 Sobic.001G378500 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.005G177100 glycosyl hydrolase, putative, expressed -


Gene co-expression network
sample Sobic007G042600 Sobic007G042600 Sobic005G162400 Sobic005G162400 Sobic007G042600--Sobic005G162400 Sobic008G168800 Sobic008G168800 Sobic007G042600--Sobic008G168800 Sobic003G419200 Sobic003G419200 Sobic007G042600--Sobic003G419200 Sobic005G220300 Sobic005G220300 Sobic007G042600--Sobic005G220300 Sobic007G177400 Sobic007G177400 Sobic007G042600--Sobic007G177400 Sobic003G443700 Sobic003G443700 Sobic007G042600--Sobic003G443700 Sobic002G178101 Sobic002G178101 Sobic007G042600--Sobic002G178101 Sobic002G028632 Sobic002G028632 Sobic007G042600--Sobic002G028632 Sobic006G015300 Sobic006G015300 Sobic007G042600--Sobic006G015300 Sobic005G162400--Sobic005G220300 Sobic005G162400--Sobic002G178101 Sobic005G162400--Sobic003G443700 Sobic005G162400--Sobic007G042600 Sobic005G162400--Sobic006G015300 Sobic004G346300 Sobic004G346300 Sobic005G162400--Sobic004G346300 Sobic002G178000 Sobic002G178000 Sobic005G162400--Sobic002G178000 Sobic005G162400--Sobic007G177400 Sobic005G216400 Sobic005G216400 Sobic005G162400--Sobic005G216400 Sobic008G168800--Sobic007G042600 Sobic008G168800--Sobic003G419200 Sobic007G186700 Sobic007G186700 Sobic008G168800--Sobic007G186700 Sobic008G168800--Sobic005G162400 Sobic004G002901 Sobic004G002901 Sobic008G168800--Sobic004G002901 Sobic008G168800--Sobic003G443700 Sobic008G168800--Sobic002G028632 Sobic008G168800--Sobic005G220300 Sobic008G168800--Sobic007G177400 Sobic003G419200--Sobic007G042600 Sobic005G105700 Sobic005G105700 Sobic003G419200--Sobic005G105700 Sobic003G419200--Sobic005G162400 Sobic003G419200--Sobic008G168800 Sobic003G419200--Sobic007G177400 Sobic003G419200--Sobic002G028632 Sobic003G419200--Sobic004G002901 Sobic003G419200--Sobic005G220300 Sobic003G419200--Sobic004G346300 Sobic005G220300--Sobic005G162400 Sobic005G220300--Sobic002G178101 Sobic005G220300--Sobic002G178000 Sobic005G220300--Sobic003G443700 Sobic005G220300--Sobic005G216400 Sobic005G060200 Sobic005G060200 Sobic005G220300--Sobic005G060200 Sobic003G357700 Sobic003G357700 Sobic005G220300--Sobic003G357700 Sobic005G220300--Sobic004G346300 Sobic006G121000 Sobic006G121000 Sobic005G220300--Sobic006G121000 Sobic007G177400--Sobic003G357700 Sobic002G366200 Sobic002G366200 Sobic007G177400--Sobic002G366200 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G064500 Sobic007G064500 Sobic007G177400--Sobic007G064500 Sobic007G177400--Sobic002G028632 Sobic007G177400--Sobic005G216400 Sobic003G023600 Sobic003G023600 Sobic007G177400--Sobic003G023600 Sobic002G025500 Sobic002G025500 Sobic007G177400--Sobic002G025500 Sobic003G443700--Sobic003G357700 Sobic003G443700--Sobic004G346300 Sobic003G443700--Sobic005G216400 Sobic003G443700--Sobic002G178101 Sobic003G443700--Sobic005G060200 Sobic003G443700--Sobic002G025500 Sobic003G443700--Sobic007G177400 Sobic003G443700--Sobic006G121000 Sobic003G443700--Sobic002G028632 Sobic002G178101--Sobic005G220300 Sobic002G178101--Sobic005G216400 Sobic002G178101--Sobic006G121000 Sobic002G178200 Sobic002G178200 Sobic002G178101--Sobic002G178200 Sobic002G178101--Sobic003G443700 Sobic002G178101--Sobic005G060200 Sobic002G178101--Sobic003G357700 Sobic002G178101--Sobic002G178000 Sobic002G178101--Sobic005G162400 Sobic002G028632--Sobic002G366200 Sobic002G028632--Sobic003G357700 Sobic002G028632--Sobic003G443700 Sobic002G028632--Sobic007G177400 Sobic002G028632--Sobic005G216400 Sobic002G028632--Sobic004G346300 Sobic002G028632--Sobic002G025500 Sobic002G028632--Sobic007G064500 Sobic002G028632--Sobic002G178101 Sobic006G015300--Sobic005G105700 Sobic006G015300--Sobic005G162400 Sobic006G015300--Sobic007G177400 Sobic006G015300--Sobic002G178200 Sobic005G202800 Sobic005G202800 Sobic006G015300--Sobic005G202800 Sobic006G015300--Sobic004G002901 Sobic006G015300--Sobic005G220300 Sobic006G015300--Sobic002G178101 Sobic006G015300--Sobic003G443700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.