Gene annotation
Transcriptome id Sobic.001G400400.1
Synonym Sb01g037900
Functional annotation pectinesterase, putative, expressed
UniProt C5WML6
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF57
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT3G05610 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os03g18860.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a002075 , Zm00025a013953 , Zm00025a049244 , Zm00025a052146 , Zm00025a002773
Brachypodium KQK22060 , KQJ84896
Barley HORVU5Hr1G108340.3 , HORVU5Hr1G108340.2 , HORVU5Hr1G108340.1 , HORVU4Hr1G054860.1 , HORVU2Hr1G115290.1 , HORVU2Hr1G115290.2 , HORVU2Hr1G115290.3 , HORVU2Hr1G115290.4 , HORVU2Hr1G115290.5
Wheat TraesCS2B02G551400 , TraesCS2A02G092800 , TraesCS5D02G460500 , TraesCS5B02G458900 , TraesCS2A02G521900 , TraesCS2D02G317900 , TraesCS2B02G107500 , TraesCS2D02G523700 , TraesCS5A02G450600 , TraesCS2D02G091800
Populus -


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cDNA sequences
Sobic.001G400400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G034200 pectate lyase precursor, putative, expressed K01728: pectate lyase
2 Sobic.009G227500 aspartyl protease family protein, putative, expressed -
3 Sobic.002G395100 DEF8 - Defensin and Defensin-like DEFL family, expressed -
4 Sobic.006G219700 nitrate-induced NOI protein, expressed -
5 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -
6 Sobic.009G259600 aspartyl protease family protein, putative, expressed -
7 Sobic.008G043400 - -
8 Sobic.006G234400 DUF617 domain containing protein, expressed -
9 Sobic.007G061800 transporter family protein, putative, expressed -
10 Sobic.004G318300 endoglucanase, putative, expressed K01179: endoglucanase
11 Sobic.001G222800 expressed protein -
12 Sobic.009G253700 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
13 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
14 Sobic.008G075800 - -
15 Sobic.001G511100 expressed protein -
16 Sobic.003G027300 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.010G230200 myb-like DNA-binding domain containing protein, expressed K09422: transcription factor MYB, plant
18 Sobic.010G177600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
19 Sobic.008G079200 OsCML28 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
20 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase


Gene co-expression network
sample Sobic001G400400 Sobic001G400400 Sobic010G034200 Sobic010G034200 Sobic001G400400--Sobic010G034200 Sobic009G227500 Sobic009G227500 Sobic001G400400--Sobic009G227500 Sobic002G395100 Sobic002G395100 Sobic001G400400--Sobic002G395100 Sobic006G219700 Sobic006G219700 Sobic001G400400--Sobic006G219700 Sobic003G197500 Sobic003G197500 Sobic001G400400--Sobic003G197500 Sobic009G259600 Sobic009G259600 Sobic001G400400--Sobic009G259600 Sobic008G043400 Sobic008G043400 Sobic001G400400--Sobic008G043400 Sobic006G234400 Sobic006G234400 Sobic001G400400--Sobic006G234400 Sobic007G061800 Sobic007G061800 Sobic001G400400--Sobic007G061800 Sobic010G034200--Sobic001G400400 Sobic010G034200--Sobic009G227500 Sobic010G034200--Sobic002G395100 Sobic010G034200--Sobic006G219700 Sobic010G034200--Sobic007G061800 Sobic008G075800 Sobic008G075800 Sobic010G034200--Sobic008G075800 Sobic010G034200--Sobic006G234400 Sobic010G034200--Sobic009G259600 Sobic001G222800 Sobic001G222800 Sobic010G034200--Sobic001G222800 Sobic009G227500--Sobic001G400400 Sobic009G227500--Sobic010G034200 Sobic009G227500--Sobic007G061800 Sobic009G227500--Sobic002G395100 Sobic009G227500--Sobic008G075800 Sobic009G227500--Sobic001G222800 Sobic009G227500--Sobic006G234400 Sobic010G177600 Sobic010G177600 Sobic009G227500--Sobic010G177600 Sobic009G227500--Sobic006G219700 Sobic002G395100--Sobic006G219700 Sobic002G395100--Sobic001G400400 Sobic002G395100--Sobic003G197500 Sobic002G395100--Sobic008G043400 Sobic002G395100--Sobic009G259600 Sobic002G395100--Sobic010G034200 Sobic004G318300 Sobic004G318300 Sobic002G395100--Sobic004G318300 Sobic003G027300 Sobic003G027300 Sobic002G395100--Sobic003G027300 Sobic010G230200 Sobic010G230200 Sobic002G395100--Sobic010G230200 Sobic006G219700--Sobic009G259600 Sobic006G219700--Sobic002G395100 Sobic006G219700--Sobic004G318300 Sobic006G219700--Sobic008G043400 Sobic006G219700--Sobic003G027300 Sobic006G219700--Sobic001G400400 Sobic006G219700--Sobic003G197500 Sobic006G219700--Sobic010G230200 Sobic009G087200 Sobic009G087200 Sobic006G219700--Sobic009G087200 Sobic003G197500--Sobic008G043400 Sobic003G114900 Sobic003G114900 Sobic003G197500--Sobic003G114900 Sobic001G511100 Sobic001G511100 Sobic003G197500--Sobic001G511100 Sobic002G427500 Sobic002G427500 Sobic003G197500--Sobic002G427500 Sobic006G127800 Sobic006G127800 Sobic003G197500--Sobic006G127800 Sobic003G197500--Sobic002G395100 Sobic003G197500--Sobic010G230200 Sobic006G270800 Sobic006G270800 Sobic003G197500--Sobic006G270800 Sobic005G031700 Sobic005G031700 Sobic003G197500--Sobic005G031700 Sobic009G259600--Sobic006G219700 Sobic009G259600--Sobic004G318300 Sobic009G259600--Sobic008G043400 Sobic009G259600--Sobic003G027300 Sobic009G259600--Sobic002G395100 Sobic009G259600--Sobic003G197500 Sobic009G259600--Sobic001G400400 Sobic009G259600--Sobic010G230200 Sobic009G259600--Sobic009G087200 Sobic008G043400--Sobic003G197500 Sobic008G043400--Sobic001G511100 Sobic008G043400--Sobic010G230200 Sobic008G043400--Sobic004G318300 Sobic008G043400--Sobic005G031700 Sobic008G043400--Sobic003G114900 Sobic008G043400--Sobic003G027300 Sobic008G043400--Sobic002G395100 Sobic008G043400--Sobic006G219700 Sobic006G234400--Sobic007G061800 Sobic006G234400--Sobic001G400400 Sobic006G234400--Sobic001G222800 Sobic006G234400--Sobic010G034200 Sobic006G234400--Sobic003G197500 Sobic009G253700 Sobic009G253700 Sobic006G234400--Sobic009G253700 Sobic006G234400--Sobic009G227500 Sobic006G173400 Sobic006G173400 Sobic006G234400--Sobic006G173400 Sobic006G234400--Sobic010G177600 Sobic007G061800--Sobic008G075800 Sobic010G118800 Sobic010G118800 Sobic007G061800--Sobic010G118800 Sobic007G061800--Sobic001G222800 Sobic007G061800--Sobic010G177600 Sobic001G364700 Sobic001G364700 Sobic007G061800--Sobic001G364700 Sobic007G222700 Sobic007G222700 Sobic007G061800--Sobic007G222700 Sobic007G061800--Sobic006G234400 Sobic007G061800--Sobic009G227500 Sobic007G061800--Sobic010G034200
Octagon: transcription factors


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