Gene annotation
Transcriptome id Sobic.008G079200.3,Sobic.008G079200.2
Synonym AGD11, Sb08g007280
Functional annotation OsCML28 - Calmodulin-related calcium sensor protein, expressed
UniProt A0A1B6PC22
Pfam PF13499
Panther DB PTHR10891:SF642 PTHR10891 PTHR10891 PTHR10891:SF642
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05990 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os12g12730.1 : OsCML28 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a054483
Brachypodium -
Barley HORVU7Hr1G008910.3 , HORVU7Hr1G008910.2 , HORVU7Hr1G008910.1
Wheat -
Populus -


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cDNA sequences
Sobic.008G079200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G114800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
2 Sobic.003G147700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.004G091000 pectate lyase precursor, putative, expressed K01728: pectate lyase
4 Sobic.005G000200 lipase, putative, expressed -
5 Sobic.006G270800 EF hand family protein, putative, expressed -
6 Sobic.006G173400 actin-depolymerizing factor, putative, expressed K05765: cofilin
7 Sobic.003G232100 - -
8 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.007G134260 - -
10 Sobic.007G103000 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
11 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -
13 Sobic.005G122100 expressed protein -
14 Sobic.005G065300 methyltransferase, putative, expressed -
15 Sobic.001G364700 glycosyl transferase 8 domain containing protein, putative, expressed -
16 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
17 Sobic.005G009700 expressed protein -
18 Sobic.009G089200 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
19 Sobic.008G102850 - -
20 Sobic.003G009600 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -


Gene co-expression network
sample Sobic008G079200 Sobic008G079200 Sobic003G114800 Sobic003G114800 Sobic008G079200--Sobic003G114800 Sobic003G147700 Sobic003G147700 Sobic008G079200--Sobic003G147700 Sobic004G091000 Sobic004G091000 Sobic008G079200--Sobic004G091000 Sobic005G000200 Sobic005G000200 Sobic008G079200--Sobic005G000200 Sobic006G270800 Sobic006G270800 Sobic008G079200--Sobic006G270800 Sobic006G173400 Sobic006G173400 Sobic008G079200--Sobic006G173400 Sobic003G232100 Sobic003G232100 Sobic008G079200--Sobic003G232100 Sobic002G427500 Sobic002G427500 Sobic008G079200--Sobic002G427500 Sobic007G134260 Sobic007G134260 Sobic008G079200--Sobic007G134260 Sobic003G114800--Sobic004G091000 Sobic003G114800--Sobic003G147700 Sobic003G114800--Sobic007G134260 Sobic003G114800--Sobic005G000200 Sobic007G103000 Sobic007G103000 Sobic003G114800--Sobic007G103000 Sobic003G114800--Sobic003G232100 Sobic003G114800--Sobic006G270800 Sobic003G114800--Sobic008G079200 Sobic005G122100 Sobic005G122100 Sobic003G114800--Sobic005G122100 Sobic003G147700--Sobic003G114800 Sobic003G147700--Sobic006G270800 Sobic003G147700--Sobic007G103000 Sobic003G147700--Sobic007G134260 Sobic003G147700--Sobic002G427500 Sobic003G147700--Sobic004G091000 Sobic006G127800 Sobic006G127800 Sobic003G147700--Sobic006G127800 Sobic003G147700--Sobic005G122100 Sobic003G147700--Sobic003G232100 Sobic004G091000--Sobic003G114800 Sobic004G091000--Sobic007G134260 Sobic004G091000--Sobic007G103000 Sobic004G091000--Sobic003G232100 Sobic004G091000--Sobic003G147700 Sobic004G091000--Sobic005G000200 Sobic004G091000--Sobic006G270800 Sobic004G091000--Sobic005G122100 Sobic005G009700 Sobic005G009700 Sobic004G091000--Sobic005G009700 Sobic005G000200--Sobic005G009700 Sobic005G000200--Sobic003G114800 Sobic005G000200--Sobic004G091000 Sobic001G539820 Sobic001G539820 Sobic005G000200--Sobic001G539820 Sobic001G364700 Sobic001G364700 Sobic005G000200--Sobic001G364700 Sobic005G000200--Sobic003G147700 Sobic001G139400 Sobic001G139400 Sobic005G000200--Sobic001G139400 Sobic005G000200--Sobic007G134260 Sobic010G118800 Sobic010G118800 Sobic005G000200--Sobic010G118800 Sobic006G270800--Sobic002G427500 Sobic006G270800--Sobic006G127800 Sobic006G270800--Sobic003G147700 Sobic006G270800--Sobic003G232100 Sobic003G009600 Sobic003G009600 Sobic006G270800--Sobic003G009600 Sobic006G270800--Sobic005G122100 Sobic009G089000 Sobic009G089000 Sobic006G270800--Sobic009G089000 Sobic006G270800--Sobic003G114800 Sobic009G090400 Sobic009G090400 Sobic006G270800--Sobic009G090400 Sobic006G173400--Sobic003G114800 Sobic006G173400--Sobic004G091000 Sobic006G173400--Sobic005G000200 Sobic002G128700 Sobic002G128700 Sobic006G173400--Sobic002G128700 Sobic008G102850 Sobic008G102850 Sobic006G173400--Sobic008G102850 Sobic006G173400--Sobic008G079200 Sobic006G173400--Sobic003G147700 Sobic006G173400--Sobic007G103000 Sobic005G065300 Sobic005G065300 Sobic006G173400--Sobic005G065300 Sobic003G232100--Sobic007G134260 Sobic003G232100--Sobic006G270800 Sobic003G232100--Sobic007G103000 Sobic003G232100--Sobic005G122100 Sobic003G232100--Sobic004G091000 Sobic003G232100--Sobic003G114800 Sobic003G232100--Sobic003G147700 Sobic003G232100--Sobic002G427500 Sobic003G232100--Sobic006G127800 Sobic002G427500--Sobic006G270800 Sobic002G427500--Sobic006G127800 Sobic002G427500--Sobic003G009600 Sobic002G427500--Sobic009G089000 Sobic003G114900 Sobic003G114900 Sobic002G427500--Sobic003G114900 Sobic002G427500--Sobic003G147700 Sobic001G024300 Sobic001G024300 Sobic002G427500--Sobic001G024300 Sobic002G427500--Sobic005G122100 Sobic002G427500--Sobic009G090400 Sobic007G134260--Sobic007G103000 Sobic007G134260--Sobic005G122100 Sobic007G134260--Sobic004G091000 Sobic007G134260--Sobic003G232100 Sobic007G134260--Sobic003G114800 Sobic007G134260--Sobic003G147700 Sobic007G134260--Sobic006G270800 Sobic007G134260--Sobic008G102850 Sobic007G134260--Sobic009G090400
Octagon: transcription factors


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