Gene annotation
Transcriptome id Sobic.006G173400.1
Synonym Sb06g024870, ADF11
Functional annotation actin-depolymerizing factor, putative, expressed
UniProt C5YDK2
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF31
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT1G01750 : actin depolymerizing factor 11
RAP-DB (Rice) LOC_Os04g46910.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a001529 , Zm00025a010273 , Zm00025a040911 , Zm00025a021422 , Zm00025a052910 , Zm00025a032230 , Zm00025a048048 , Zm00025a014631
Brachypodium KQK00663 , KQK16232 , PNT77739 , PNT61627 , KQK22600
Barley HORVU4Hr1G063830.7 , HORVU2Hr1G097130.4 , HORVU2Hr1G097130.5 , HORVU2Hr1G097130.1 , HORVU2Hr1G097130.2 , HORVU2Hr1G097130.3 , HORVU2Hr1G053570.1 , HORVU4Hr1G063830.8 , HORVU4Hr1G063830.4 , HORVU4Hr1G063830.5 , HORVU4Hr1G063830.6 , HORVU4Hr1G063830.2 , HORVU4Hr1G063830.3 , HORVU2Hr1G053580.1 , HORVU2Hr1G053580.3 , HORVU2Hr1G053580.2
Wheat TraesCS2D02G408100 , TraesCS2D02G235200 , TraesCS4A02G071400 , TraesCS6A02G247000 , TraesCS2A02G410700 , TraesCS6D02G229200 , TraesCS2B02G255200 , TraesCS4D02G228100 , TraesCS2B02G429500 , TraesCS4B02G227300 , TraesCS6B02G277600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G114800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
2 Sobic.004G091000 pectate lyase precursor, putative, expressed K01728: pectate lyase
3 Sobic.005G000200 lipase, putative, expressed -
4 Sobic.002G128700 expressed protein -
5 Sobic.008G102850 - -
6 Sobic.008G079200 OsCML28 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.003G147700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
8 Sobic.007G103000 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
9 Sobic.005G065300 methyltransferase, putative, expressed -
10 Sobic.007G134260 - -
11 Sobic.003G232100 - -
12 Sobic.010G271600 exo70 exocyst complex subunit family protein, putative, expressed -
13 Sobic.006G270800 EF hand family protein, putative, expressed -
14 Sobic.005G009700 expressed protein -
15 Sobic.001G539820 - -
16 Sobic.001G364700 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
18 Sobic.010G190500 - -
19 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase
20 Sobic.002G304300 integral membrane protein DUF6 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G173400 Sobic006G173400 Sobic003G114800 Sobic003G114800 Sobic006G173400--Sobic003G114800 Sobic004G091000 Sobic004G091000 Sobic006G173400--Sobic004G091000 Sobic005G000200 Sobic005G000200 Sobic006G173400--Sobic005G000200 Sobic002G128700 Sobic002G128700 Sobic006G173400--Sobic002G128700 Sobic008G102850 Sobic008G102850 Sobic006G173400--Sobic008G102850 Sobic008G079200 Sobic008G079200 Sobic006G173400--Sobic008G079200 Sobic003G147700 Sobic003G147700 Sobic006G173400--Sobic003G147700 Sobic007G103000 Sobic007G103000 Sobic006G173400--Sobic007G103000 Sobic005G065300 Sobic005G065300 Sobic006G173400--Sobic005G065300 Sobic003G114800--Sobic004G091000 Sobic003G114800--Sobic003G147700 Sobic007G134260 Sobic007G134260 Sobic003G114800--Sobic007G134260 Sobic003G114800--Sobic005G000200 Sobic003G114800--Sobic007G103000 Sobic003G232100 Sobic003G232100 Sobic003G114800--Sobic003G232100 Sobic006G270800 Sobic006G270800 Sobic003G114800--Sobic006G270800 Sobic003G114800--Sobic008G079200 Sobic005G122100 Sobic005G122100 Sobic003G114800--Sobic005G122100 Sobic004G091000--Sobic003G114800 Sobic004G091000--Sobic007G134260 Sobic004G091000--Sobic007G103000 Sobic004G091000--Sobic003G232100 Sobic004G091000--Sobic003G147700 Sobic004G091000--Sobic005G000200 Sobic004G091000--Sobic006G270800 Sobic004G091000--Sobic005G122100 Sobic005G009700 Sobic005G009700 Sobic004G091000--Sobic005G009700 Sobic005G000200--Sobic005G009700 Sobic005G000200--Sobic003G114800 Sobic005G000200--Sobic004G091000 Sobic001G539820 Sobic001G539820 Sobic005G000200--Sobic001G539820 Sobic001G364700 Sobic001G364700 Sobic005G000200--Sobic001G364700 Sobic005G000200--Sobic003G147700 Sobic001G139400 Sobic001G139400 Sobic005G000200--Sobic001G139400 Sobic005G000200--Sobic007G134260 Sobic010G118800 Sobic010G118800 Sobic005G000200--Sobic010G118800 Sobic002G128700--Sobic001G539820 Sobic002G128700--Sobic005G009700 Sobic002G128700--Sobic005G000200 Sobic002G225800 Sobic002G225800 Sobic002G128700--Sobic002G225800 Sobic002G128700--Sobic006G173400 Sobic007G148233 Sobic007G148233 Sobic002G128700--Sobic007G148233 Sobic002G128700--Sobic001G139400 Sobic002G128700--Sobic001G364700 Sobic001G539880 Sobic001G539880 Sobic002G128700--Sobic001G539880 Sobic008G102850--Sobic007G103000 Sobic008G102850--Sobic007G134260 Sobic005G214700 Sobic005G214700 Sobic008G102850--Sobic005G214700 Sobic008G102850--Sobic005G122100 Sobic008G102850--Sobic005G065300 Sobic008G102850--Sobic003G147700 Sobic008G102850--Sobic004G091000 Sobic008G102850--Sobic003G114800 Sobic008G102850--Sobic003G232100 Sobic008G079200--Sobic003G114800 Sobic008G079200--Sobic003G147700 Sobic008G079200--Sobic004G091000 Sobic008G079200--Sobic005G000200 Sobic008G079200--Sobic006G270800 Sobic008G079200--Sobic006G173400 Sobic008G079200--Sobic003G232100 Sobic002G427500 Sobic002G427500 Sobic008G079200--Sobic002G427500 Sobic008G079200--Sobic007G134260 Sobic003G147700--Sobic003G114800 Sobic003G147700--Sobic006G270800 Sobic003G147700--Sobic007G103000 Sobic003G147700--Sobic007G134260 Sobic003G147700--Sobic002G427500 Sobic003G147700--Sobic004G091000 Sobic006G127800 Sobic006G127800 Sobic003G147700--Sobic006G127800 Sobic003G147700--Sobic005G122100 Sobic003G147700--Sobic003G232100 Sobic007G103000--Sobic007G134260 Sobic007G103000--Sobic005G122100 Sobic007G103000--Sobic004G091000 Sobic007G103000--Sobic003G232100 Sobic007G103000--Sobic003G147700 Sobic007G103000--Sobic003G114800 Sobic007G103000--Sobic008G102850 Sobic007G103000--Sobic006G270800 Sobic009G090400 Sobic009G090400 Sobic007G103000--Sobic009G090400 Sobic009G089200 Sobic009G089200 Sobic005G065300--Sobic009G089200 Sobic005G065300--Sobic007G103000 Sobic005G065300--Sobic007G134260 Sobic005G065300--Sobic008G102850 Sobic005G065300--Sobic003G114800 Sobic005G065300--Sobic004G091000 Sobic005G065300--Sobic005G122100 Sobic005G065300--Sobic003G147700 Sobic005G065300--Sobic003G232100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.