Gene annotation
Transcriptome id Sobic.010G034200.1
Synonym Sb10g003080
Functional annotation pectate lyase precursor, putative, expressed
UniProt C5Z3W2
Pfam PF04431 PF00544
Panther DB PTHR31683 PTHR31683:SF7
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15110 : Pectate lyase family protein
RAP-DB (Rice) LOC_Os06g05260.1 : pectate lyase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041505 , Zm00025a042286 , Zm00025a050050 , Zm00025a034576 , Zm00025a051171
Brachypodium KQK17868
Barley HORVU1Hr1G038220.10 , HORVU1Hr1G038220.11 , HORVU1Hr1G038220.4 , HORVU1Hr1G038220.5 , HORVU1Hr1G038220.6 , HORVU1Hr1G038220.7 , HORVU1Hr1G038220.1 , HORVU1Hr1G038220.3 , HORVU1Hr1G038220.8 , HORVU1Hr1G038220.9 , HORVU7Hr1G085860.1 , HORVU7Hr1G085860.3 , HORVU7Hr1G019500.1
Wheat TraesCS7D02G356700 , TraesCS1B02G161000 , TraesCS1A02G143600 , TraesCS1D02G142400 , TraesCS7B02G261700 , TraesCS7A02G365700
Populus -


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cDNA sequences
Sobic.010G034200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G400400 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.009G227500 aspartyl protease family protein, putative, expressed -
3 Sobic.002G395100 DEF8 - Defensin and Defensin-like DEFL family, expressed -
4 Sobic.006G219700 nitrate-induced NOI protein, expressed -
5 Sobic.007G061800 transporter family protein, putative, expressed -
6 Sobic.008G075800 - -
7 Sobic.006G234400 DUF617 domain containing protein, expressed -
8 Sobic.009G259600 aspartyl protease family protein, putative, expressed -
9 Sobic.001G222800 expressed protein -
10 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -
11 Sobic.009G166000 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.010G177600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
13 Sobic.009G253700 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
14 Sobic.008G043400 - -
15 Sobic.004G331500 similar to Cation-transporting ATPase(PubMedID : 29862293)@ATPase 8, plasma membrane-type, putative, expressed K01535: PMA1, H+-transporting ATPase
16 Sobic.004G318300 endoglucanase, putative, expressed K01179: endoglucanase
17 Sobic.004G287200 OsSub26 - Putative Subtilisin homologue, expressed -
18 Sobic.010G118800 - -
19 Sobic.008G079200 OsCML28 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
20 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic010G034200 Sobic010G034200 Sobic001G400400 Sobic001G400400 Sobic010G034200--Sobic001G400400 Sobic009G227500 Sobic009G227500 Sobic010G034200--Sobic009G227500 Sobic002G395100 Sobic002G395100 Sobic010G034200--Sobic002G395100 Sobic006G219700 Sobic006G219700 Sobic010G034200--Sobic006G219700 Sobic007G061800 Sobic007G061800 Sobic010G034200--Sobic007G061800 Sobic008G075800 Sobic008G075800 Sobic010G034200--Sobic008G075800 Sobic006G234400 Sobic006G234400 Sobic010G034200--Sobic006G234400 Sobic009G259600 Sobic009G259600 Sobic010G034200--Sobic009G259600 Sobic001G222800 Sobic001G222800 Sobic010G034200--Sobic001G222800 Sobic001G400400--Sobic010G034200 Sobic001G400400--Sobic009G227500 Sobic001G400400--Sobic002G395100 Sobic001G400400--Sobic006G219700 Sobic003G197500 Sobic003G197500 Sobic001G400400--Sobic003G197500 Sobic001G400400--Sobic009G259600 Sobic008G043400 Sobic008G043400 Sobic001G400400--Sobic008G043400 Sobic001G400400--Sobic006G234400 Sobic001G400400--Sobic007G061800 Sobic009G227500--Sobic001G400400 Sobic009G227500--Sobic010G034200 Sobic009G227500--Sobic007G061800 Sobic009G227500--Sobic002G395100 Sobic009G227500--Sobic008G075800 Sobic009G227500--Sobic001G222800 Sobic009G227500--Sobic006G234400 Sobic010G177600 Sobic010G177600 Sobic009G227500--Sobic010G177600 Sobic009G227500--Sobic006G219700 Sobic002G395100--Sobic006G219700 Sobic002G395100--Sobic001G400400 Sobic002G395100--Sobic003G197500 Sobic002G395100--Sobic008G043400 Sobic002G395100--Sobic009G259600 Sobic002G395100--Sobic010G034200 Sobic004G318300 Sobic004G318300 Sobic002G395100--Sobic004G318300 Sobic003G027300 Sobic003G027300 Sobic002G395100--Sobic003G027300 Sobic010G230200 Sobic010G230200 Sobic002G395100--Sobic010G230200 Sobic006G219700--Sobic009G259600 Sobic006G219700--Sobic002G395100 Sobic006G219700--Sobic004G318300 Sobic006G219700--Sobic008G043400 Sobic006G219700--Sobic003G027300 Sobic006G219700--Sobic001G400400 Sobic006G219700--Sobic003G197500 Sobic006G219700--Sobic010G230200 Sobic009G087200 Sobic009G087200 Sobic006G219700--Sobic009G087200 Sobic007G061800--Sobic008G075800 Sobic010G118800 Sobic010G118800 Sobic007G061800--Sobic010G118800 Sobic007G061800--Sobic001G222800 Sobic007G061800--Sobic010G177600 Sobic001G364700 Sobic001G364700 Sobic007G061800--Sobic001G364700 Sobic007G222700 Sobic007G222700 Sobic007G061800--Sobic007G222700 Sobic007G061800--Sobic006G234400 Sobic007G061800--Sobic009G227500 Sobic007G061800--Sobic010G034200 Sobic008G075800--Sobic007G061800 Sobic008G075800--Sobic001G222800 Sobic008G075800--Sobic010G118800 Sobic008G075800--Sobic010G177600 Sobic004G331500 Sobic004G331500 Sobic008G075800--Sobic004G331500 Sobic009G166000 Sobic009G166000 Sobic008G075800--Sobic009G166000 Sobic004G287200 Sobic004G287200 Sobic008G075800--Sobic004G287200 Sobic008G075800--Sobic007G222700 Sobic008G075800--Sobic010G034200 Sobic006G234400--Sobic007G061800 Sobic006G234400--Sobic001G400400 Sobic006G234400--Sobic001G222800 Sobic006G234400--Sobic010G034200 Sobic006G234400--Sobic003G197500 Sobic009G253700 Sobic009G253700 Sobic006G234400--Sobic009G253700 Sobic006G234400--Sobic009G227500 Sobic006G173400 Sobic006G173400 Sobic006G234400--Sobic006G173400 Sobic006G234400--Sobic010G177600 Sobic009G259600--Sobic006G219700 Sobic009G259600--Sobic004G318300 Sobic009G259600--Sobic008G043400 Sobic009G259600--Sobic003G027300 Sobic009G259600--Sobic002G395100 Sobic009G259600--Sobic003G197500 Sobic009G259600--Sobic001G400400 Sobic009G259600--Sobic010G230200 Sobic009G259600--Sobic009G087200 Sobic001G222800--Sobic008G075800 Sobic001G222800--Sobic007G061800 Sobic001G222800--Sobic010G118800 Sobic001G222800--Sobic010G177600 Sobic001G222800--Sobic004G287200 Sobic001G222800--Sobic007G222700 Sobic001G222800--Sobic001G364700 Sobic001G222800--Sobic004G331500 Sobic001G222800--Sobic006G234400
Octagon: transcription factors


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