Gene annotation
Transcriptome id Sobic.001G432600.1
Synonym Sb01g040700
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5SAD8
Pfam PF13962
Panther DB PTHR24177 PTHR24177:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11000 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os03g15080.1 : expressed protein
MaizeGDB (Corn) Zm00025a001648 , Zm00025a001645 , Zm00025a001653
Brachypodium -
Barley HORVU4Hr1G062330.1 , HORVU4Hr1G062330.2
Wheat TraesCS4B02G220000 , TraesCS4A02G084200
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G242800 RIPER9 - Ripening-related family protein precursor, putative, expressed -
2 Sobic.010G160033 - -
3 Sobic.008G025300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@DUF567 domain containing protein, putative, expressed -
4 Sobic.002G369600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 3-O-glucosyltransferase, putative, expressed -
5 Sobic.004G245200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G140000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
7 Sobic.004G109300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G530350 - -
9 Sobic.010G193200 expressed protein -
10 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
11 Sobic.002G311300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.003G265150 - -
13 Sobic.008G038100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G102401 - -
15 Sobic.008G070900 expressed protein -
16 Sobic.007G063700 - -
17 Sobic.001G226800 zinc finger family protein, putative, expressed -
18 Sobic.006G097800 anthocyanin 5-O-glucosyltransferase, putative, expressed -
19 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
20 Sobic.008G181300 expressed protein -


Gene co-expression network
sample Sobic001G432600 Sobic001G432600 Sobic006G242800 Sobic006G242800 Sobic001G432600--Sobic006G242800 Sobic010G160033 Sobic010G160033 Sobic001G432600--Sobic010G160033 Sobic008G025300 Sobic008G025300 Sobic001G432600--Sobic008G025300 Sobic002G369600 Sobic002G369600 Sobic001G432600--Sobic002G369600 Sobic004G245200 Sobic004G245200 Sobic001G432600--Sobic004G245200 Sobic004G140000 Sobic004G140000 Sobic001G432600--Sobic004G140000 Sobic004G109300 Sobic004G109300 Sobic001G432600--Sobic004G109300 Sobic001G530350 Sobic001G530350 Sobic001G432600--Sobic001G530350 Sobic010G193200 Sobic010G193200 Sobic001G432600--Sobic010G193200 Sobic006G242800--Sobic008G025300 Sobic001G345400 Sobic001G345400 Sobic006G242800--Sobic001G345400 Sobic006G242800--Sobic001G432600 Sobic001G182600 Sobic001G182600 Sobic006G242800--Sobic001G182600 Sobic006G242800--Sobic010G160033 Sobic009G192100 Sobic009G192100 Sobic006G242800--Sobic009G192100 Sobic003G050350 Sobic003G050350 Sobic006G242800--Sobic003G050350 Sobic005G161100 Sobic005G161100 Sobic006G242800--Sobic005G161100 Sobic001G226800 Sobic001G226800 Sobic006G242800--Sobic001G226800 Sobic010G160033--Sobic002G369600 Sobic005G215500 Sobic005G215500 Sobic010G160033--Sobic005G215500 Sobic001G357500 Sobic001G357500 Sobic010G160033--Sobic001G357500 Sobic010G160033--Sobic004G245200 Sobic006G101300 Sobic006G101300 Sobic010G160033--Sobic006G101300 Sobic007G063700 Sobic007G063700 Sobic010G160033--Sobic007G063700 Sobic010G160033--Sobic001G432600 Sobic006G101100 Sobic006G101100 Sobic010G160033--Sobic006G101100 Sobic010G160033--Sobic001G345400 Sobic008G025300--Sobic003G050350 Sobic009G014600 Sobic009G014600 Sobic008G025300--Sobic009G014600 Sobic001G056500 Sobic001G056500 Sobic008G025300--Sobic001G056500 Sobic008G038100 Sobic008G038100 Sobic008G025300--Sobic008G038100 Sobic003G310500 Sobic003G310500 Sobic008G025300--Sobic003G310500 Sobic008G025300--Sobic001G345400 Sobic002G298400 Sobic002G298400 Sobic008G025300--Sobic002G298400 Sobic007G055600 Sobic007G055600 Sobic008G025300--Sobic007G055600 Sobic007G076000 Sobic007G076000 Sobic008G025300--Sobic007G076000 Sobic008G140900 Sobic008G140900 Sobic002G369600--Sobic008G140900 Sobic005G011900 Sobic005G011900 Sobic002G369600--Sobic005G011900 Sobic009G071000 Sobic009G071000 Sobic002G369600--Sobic009G071000 Sobic001G539300 Sobic001G539300 Sobic002G369600--Sobic001G539300 Sobic004G245200--Sobic010G160033 Sobic003G110200 Sobic003G110200 Sobic004G245200--Sobic003G110200 Sobic001G234800 Sobic001G234800 Sobic004G245200--Sobic001G234800 Sobic006G009000 Sobic006G009000 Sobic004G245200--Sobic006G009000 Sobic001G225600 Sobic001G225600 Sobic004G245200--Sobic001G225600 Sobic004G233400 Sobic004G233400 Sobic004G245200--Sobic004G233400 Sobic003G102200 Sobic003G102200 Sobic004G245200--Sobic003G102200 Sobic006G113000 Sobic006G113000 Sobic004G245200--Sobic006G113000 Sobic001G195100 Sobic001G195100 Sobic004G245200--Sobic001G195100 Sobic009G038000 Sobic009G038000 Sobic004G140000--Sobic009G038000 Sobic002G216500 Sobic002G216500 Sobic004G140000--Sobic002G216500 Sobic002G160600 Sobic002G160600 Sobic004G140000--Sobic002G160600 Sobic004G140000--Sobic008G038100 Sobic001G314800 Sobic001G314800 Sobic004G140000--Sobic001G314800 Sobic004G140000--Sobic003G310500 Sobic010G214200 Sobic010G214200 Sobic004G140000--Sobic010G214200 Sobic006G265000 Sobic006G265000 Sobic004G140000--Sobic006G265000 Sobic004G101000 Sobic004G101000 Sobic004G140000--Sobic004G101000 Sobic008G070900 Sobic008G070900 Sobic004G109300--Sobic008G070900 Sobic002G311300 Sobic002G311300 Sobic004G109300--Sobic002G311300 Sobic003G024900 Sobic003G024900 Sobic004G109300--Sobic003G024900 Sobic003G265150 Sobic003G265150 Sobic004G109300--Sobic003G265150 Sobic004G109300--Sobic001G432600 Sobic002G248800 Sobic002G248800 Sobic004G109300--Sobic002G248800 Sobic010G207250 Sobic010G207250 Sobic004G109300--Sobic010G207250 Sobic001G299300 Sobic001G299300 Sobic004G109300--Sobic001G299300 Sobic008G127000 Sobic008G127000 Sobic004G109300--Sobic008G127000 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G526900 Sobic001G526900 Sobic001G530350--Sobic001G526900 Sobic003G296300 Sobic003G296300 Sobic001G530350--Sobic003G296300 Sobic001G093900 Sobic001G093900 Sobic001G530350--Sobic001G093900 Sobic001G530350--Sobic001G345400 Sobic009G100800 Sobic009G100800 Sobic001G530350--Sobic009G100800 Sobic001G530350--Sobic001G225600 Sobic003G013600 Sobic003G013600 Sobic001G530350--Sobic003G013600 Sobic006G246100 Sobic006G246100 Sobic001G530350--Sobic006G246100 Sobic010G193200--Sobic001G432600 Sobic010G193200--Sobic010G160033 Sobic009G115600 Sobic009G115600 Sobic010G193200--Sobic009G115600 Sobic010G122400 Sobic010G122400 Sobic010G193200--Sobic010G122400 Sobic010G193200--Sobic004G245200 Sobic010G224600 Sobic010G224600 Sobic010G193200--Sobic010G224600 Sobic003G339800 Sobic003G339800 Sobic010G193200--Sobic003G339800 Sobic009G173900 Sobic009G173900 Sobic010G193200--Sobic009G173900 Sobic003G366200 Sobic003G366200 Sobic010G193200--Sobic003G366200
Octagon: transcription factors


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