Gene annotation
Transcriptome id Sobic.004G109300.1
Synonym Sb04g008940
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZ24
Pfam PF13639
Panther DB PTHR14155:SF165 PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G18930 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15010.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G070900 expressed protein -
2 Sobic.002G311300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
3 Sobic.003G024900 carnitine racemase like protein, putative, expressed -
4 Sobic.003G265150 - -
5 Sobic.001G432600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G248800 expressed protein -
7 Sobic.010G207250 - -
8 Sobic.001G299300 - -
9 Sobic.008G127000 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.004G349237 - -
11 Sobic.005G102401 - -
12 Sobic.001G213500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G372900 - -
14 Sobic.006G058400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
15 Sobic.004G181300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
16 Sobic.003G414900 DUF567 domain containing protein, putative, expressed -
17 Sobic.006G242800 RIPER9 - Ripening-related family protein precursor, putative, expressed -
18 Sobic.006G112900 heavy metal transport/detoxification protein, putative, expressed -
19 Sobic.010G083300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
20 Sobic.003G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6


Gene co-expression network
sample Sobic004G109300 Sobic004G109300 Sobic008G070900 Sobic008G070900 Sobic004G109300--Sobic008G070900 Sobic002G311300 Sobic002G311300 Sobic004G109300--Sobic002G311300 Sobic003G024900 Sobic003G024900 Sobic004G109300--Sobic003G024900 Sobic003G265150 Sobic003G265150 Sobic004G109300--Sobic003G265150 Sobic001G432600 Sobic001G432600 Sobic004G109300--Sobic001G432600 Sobic002G248800 Sobic002G248800 Sobic004G109300--Sobic002G248800 Sobic010G207250 Sobic010G207250 Sobic004G109300--Sobic010G207250 Sobic001G299300 Sobic001G299300 Sobic004G109300--Sobic001G299300 Sobic008G127000 Sobic008G127000 Sobic004G109300--Sobic008G127000 Sobic002G214500 Sobic002G214500 Sobic008G070900--Sobic002G214500 Sobic008G070900--Sobic004G109300 Sobic001G321700 Sobic001G321700 Sobic008G070900--Sobic001G321700 Sobic001G280300 Sobic001G280300 Sobic008G070900--Sobic001G280300 Sobic008G070900--Sobic003G024900 Sobic004G181300 Sobic004G181300 Sobic008G070900--Sobic004G181300 Sobic001G319000 Sobic001G319000 Sobic008G070900--Sobic001G319000 Sobic001G213500 Sobic001G213500 Sobic008G070900--Sobic001G213500 Sobic001G330925 Sobic001G330925 Sobic008G070900--Sobic001G330925 Sobic002G311300--Sobic003G024900 Sobic002G311300--Sobic010G207250 Sobic002G311300--Sobic003G265150 Sobic004G287000 Sobic004G287000 Sobic002G311300--Sobic004G287000 Sobic002G361600 Sobic002G361600 Sobic002G311300--Sobic002G361600 Sobic004G271100 Sobic004G271100 Sobic002G311300--Sobic004G271100 Sobic002G348500 Sobic002G348500 Sobic002G311300--Sobic002G348500 Sobic002G145600 Sobic002G145600 Sobic002G311300--Sobic002G145600 Sobic002G311300--Sobic004G109300 Sobic003G024900--Sobic002G311300 Sobic002G235500 Sobic002G235500 Sobic003G024900--Sobic002G235500 Sobic007G108700 Sobic007G108700 Sobic003G024900--Sobic007G108700 Sobic003G024900--Sobic002G348500 Sobic003G024900--Sobic004G287000 Sobic003G212300 Sobic003G212300 Sobic003G024900--Sobic003G212300 Sobic001G108800 Sobic001G108800 Sobic003G024900--Sobic001G108800 Sobic005G013600 Sobic005G013600 Sobic003G024900--Sobic005G013600 Sobic001G021900 Sobic001G021900 Sobic003G024900--Sobic001G021900 Sobic004G349237 Sobic004G349237 Sobic003G265150--Sobic004G349237 Sobic003G265150--Sobic002G361600 Sobic003G414900 Sobic003G414900 Sobic003G265150--Sobic003G414900 Sobic006G138966 Sobic006G138966 Sobic003G265150--Sobic006G138966 Sobic002G421501 Sobic002G421501 Sobic003G265150--Sobic002G421501 Sobic001G512633 Sobic001G512633 Sobic003G265150--Sobic001G512633 Sobic002G372900 Sobic002G372900 Sobic003G265150--Sobic002G372900 Sobic002G185400 Sobic002G185400 Sobic003G265150--Sobic002G185400 Sobic004G034100 Sobic004G034100 Sobic003G265150--Sobic004G034100 Sobic006G242800 Sobic006G242800 Sobic001G432600--Sobic006G242800 Sobic010G160033 Sobic010G160033 Sobic001G432600--Sobic010G160033 Sobic008G025300 Sobic008G025300 Sobic001G432600--Sobic008G025300 Sobic002G369600 Sobic002G369600 Sobic001G432600--Sobic002G369600 Sobic004G245200 Sobic004G245200 Sobic001G432600--Sobic004G245200 Sobic004G140000 Sobic004G140000 Sobic001G432600--Sobic004G140000 Sobic001G432600--Sobic004G109300 Sobic001G530350 Sobic001G530350 Sobic001G432600--Sobic001G530350 Sobic010G193200 Sobic010G193200 Sobic001G432600--Sobic010G193200 Sobic001G449300 Sobic001G449300 Sobic002G248800--Sobic001G449300 Sobic010G025600 Sobic010G025600 Sobic002G248800--Sobic010G025600 Sobic010G174000 Sobic010G174000 Sobic002G248800--Sobic010G174000 Sobic002G075300 Sobic002G075300 Sobic002G248800--Sobic002G075300 Sobic002G163500 Sobic002G163500 Sobic002G248800--Sobic002G163500 Sobic002G074700 Sobic002G074700 Sobic002G248800--Sobic002G074700 Sobic003G012750 Sobic003G012750 Sobic002G248800--Sobic003G012750 Sobic005G150700 Sobic005G150700 Sobic002G248800--Sobic005G150700 Sobic008G053500 Sobic008G053500 Sobic002G248800--Sobic008G053500 Sobic010G207250--Sobic002G311300 Sobic010G207250--Sobic002G248800 Sobic010G207250--Sobic003G024900 Sobic008G040800 Sobic008G040800 Sobic010G207250--Sobic008G040800 Sobic010G207250--Sobic003G265150 Sobic001G052500 Sobic001G052500 Sobic010G207250--Sobic001G052500 Sobic003G039800 Sobic003G039800 Sobic010G207250--Sobic003G039800 Sobic010G207250--Sobic004G034100 Sobic010G040700 Sobic010G040700 Sobic010G207250--Sobic010G040700 Sobic004G238000 Sobic004G238000 Sobic001G299300--Sobic004G238000 Sobic004G212250 Sobic004G212250 Sobic001G299300--Sobic004G212250 Sobic003G076300 Sobic003G076300 Sobic001G299300--Sobic003G076300 Sobic010G028366 Sobic010G028366 Sobic001G299300--Sobic010G028366 Sobic003G177350 Sobic003G177350 Sobic001G299300--Sobic003G177350 Sobic003G350850 Sobic003G350850 Sobic001G299300--Sobic003G350850 Sobic007G206900 Sobic007G206900 Sobic001G299300--Sobic007G206900 Sobic005G208275 Sobic005G208275 Sobic001G299300--Sobic005G208275 Sobic001G299300--Sobic010G174000 Sobic003G404050 Sobic003G404050 Sobic008G127000--Sobic003G404050 Sobic009G030501 Sobic009G030501 Sobic008G127000--Sobic009G030501 Sobic010G011100 Sobic010G011100 Sobic008G127000--Sobic010G011100 Sobic001G249800 Sobic001G249800 Sobic008G127000--Sobic001G249800 Sobic001G436450 Sobic001G436450 Sobic008G127000--Sobic001G436450 Sobic003G406850 Sobic003G406850 Sobic008G127000--Sobic003G406850 Sobic001G032850 Sobic001G032850 Sobic008G127000--Sobic001G032850 Sobic007G004400 Sobic007G004400 Sobic008G127000--Sobic007G004400 Sobic002G147550 Sobic002G147550 Sobic008G127000--Sobic002G147550
Octagon: transcription factors


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