Gene annotation
Transcriptome id Sobic.006G058400.3,Sobic.006G058400.4,Sobic.006G058400.1,Sobic.006G058400.2
Synonym Sb06g014640, SbTri13
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor, putative, expressed
UniProt A0A1B6PKH4 , C5YF89 , A0A1B6PKF9 , A0A1B6PKG7
Pfam PF13837
Panther DB PTHR33492 PTHR33492:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33550 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os04g32590.1,LOC_Os02g31160.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a011667 , Zm00025a020450 , Zm00025a055941 , Zm00025a031340
Brachypodium KQJ99627 , KQJ99628 , PNT68695 , PNT68697 , PNT68696 , KQJ82367 , KQJ82369 , KQJ82368
Barley HORVU3Hr1G096240.1 , HORVU3Hr1G096240.3 , HORVU3Hr1G096240.4 , HORVU2Hr1G071100.11 , HORVU2Hr1G071100.10 , HORVU2Hr1G071100.9 , HORVU2Hr1G071100.8 , HORVU2Hr1G071100.1 , HORVU2Hr1G071100.3 , HORVU2Hr1G071100.2 , HORVU2Hr1G071100.5 , HORVU2Hr1G071100.4 , HORVU2Hr1G071100.7 , HORVU2Hr1G071100.6 , HORVU5Hr1G106480.2 , HORVU5Hr1G106480.3 , HORVU5Hr1G106480.1 , HORVU5Hr1G106480.4
Wheat TraesCS2B02G304400 , TraesCS2B02G304400 , TraesCS3D02G434100 , TraesCS3B02G475300 , TraesCS3A02G441300 , TraesCS2D02G286000 , TraesCS2A02G287600 , TraesCS2A02G287600 , TraesCS2D02G286000
Populus -


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cDNA sequences
Sobic.006G058400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G042300 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
2 Sobic.010G192700 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
3 Sobic.003G363600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
4 Sobic.004G341600 O-methyltransferase, putative, expressed -
5 Sobic.002G153600 expressed protein -
6 Sobic.004G157700 hydroxyproline-rich glycoprotein family protein, putative, expressed -
7 Sobic.004G299300 protein kinase domain containing protein, expressed -
8 Sobic.009G027200 tetraspanin family protein, putative, expressed -
9 Sobic.009G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@D-mannose binding lectin family protein, expressed -
10 Sobic.010G229300 expressed protein -
11 Sobic.008G040800 OsFBX396 - F-box domain containing protein, expressed -
12 Sobic.006G232100 expressed protein -
13 Sobic.003G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
14 Sobic.003G024900 carnitine racemase like protein, putative, expressed -
15 Sobic.003G125500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_CR4L.2 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.002G356500 expressed protein -
17 Sobic.004G304700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin receptor-type protein kinase, putative, expressed -
18 Sobic.003G226600 WRKY12, expressed -
19 Sobic.003G186066 - -
20 Sobic.004G278600 OsFBX59 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G058400 Sobic006G058400 Sobic008G042300 Sobic008G042300 Sobic006G058400--Sobic008G042300 Sobic010G192700 Sobic010G192700 Sobic006G058400--Sobic010G192700 Sobic003G363600 Sobic003G363600 Sobic006G058400--Sobic003G363600 Sobic004G341600 Sobic004G341600 Sobic006G058400--Sobic004G341600 Sobic002G153600 Sobic002G153600 Sobic006G058400--Sobic002G153600 Sobic004G157700 Sobic004G157700 Sobic006G058400--Sobic004G157700 Sobic004G299300 Sobic004G299300 Sobic006G058400--Sobic004G299300 Sobic009G027200 Sobic009G027200 Sobic006G058400--Sobic009G027200 Sobic009G105500 Sobic009G105500 Sobic006G058400--Sobic009G105500 Sobic008G042300--Sobic006G058400 Sobic003G267700 Sobic003G267700 Sobic008G042300--Sobic003G267700 Sobic004G037100 Sobic004G037100 Sobic008G042300--Sobic004G037100 Sobic004G243000 Sobic004G243000 Sobic008G042300--Sobic004G243000 Sobic009G148800 Sobic009G148800 Sobic008G042300--Sobic009G148800 Sobic003G226600 Sobic003G226600 Sobic008G042300--Sobic003G226600 Sobic004G046400 Sobic004G046400 Sobic008G042300--Sobic004G046400 Sobic002G168400 Sobic002G168400 Sobic008G042300--Sobic002G168400 Sobic008G042300--Sobic010G192700 Sobic010G229300 Sobic010G229300 Sobic010G192700--Sobic010G229300 Sobic003G186066 Sobic003G186066 Sobic010G192700--Sobic003G186066 Sobic003G120900 Sobic003G120900 Sobic010G192700--Sobic003G120900 Sobic010G192700--Sobic002G153600 Sobic003G348900 Sobic003G348900 Sobic010G192700--Sobic003G348900 Sobic006G232100 Sobic006G232100 Sobic010G192700--Sobic006G232100 Sobic006G112000 Sobic006G112000 Sobic010G192700--Sobic006G112000 Sobic003G008200 Sobic003G008200 Sobic010G192700--Sobic003G008200 Sobic001G097800 Sobic001G097800 Sobic010G192700--Sobic001G097800 Sobic004G202900 Sobic004G202900 Sobic003G363600--Sobic004G202900 SobicK044402 SobicK044402 Sobic003G363600--SobicK044402 Sobic005G227900 Sobic005G227900 Sobic003G363600--Sobic005G227900 Sobic004G317401 Sobic004G317401 Sobic003G363600--Sobic004G317401 Sobic002G373700 Sobic002G373700 Sobic003G363600--Sobic002G373700 Sobic007G191400 Sobic007G191400 Sobic003G363600--Sobic007G191400 Sobic010G019600 Sobic010G019600 Sobic003G363600--Sobic010G019600 Sobic002G085200 Sobic002G085200 Sobic003G363600--Sobic002G085200 Sobic003G363600--Sobic004G341600 Sobic004G341600--Sobic004G202900 Sobic004G341600--Sobic006G232100 Sobic004G341600--Sobic002G153600 Sobic002G075300 Sobic002G075300 Sobic004G341600--Sobic002G075300 Sobic003G015700 Sobic003G015700 Sobic004G341600--Sobic003G015700 Sobic004G341600--Sobic003G363600 Sobic008G174850 Sobic008G174850 Sobic004G341600--Sobic008G174850 Sobic002G075100 Sobic002G075100 Sobic004G341600--Sobic002G075100 Sobic003G373050 Sobic003G373050 Sobic004G341600--Sobic003G373050 Sobic002G153600--Sobic006G232100 Sobic003G142800 Sobic003G142800 Sobic002G153600--Sobic003G142800 Sobic006G217400 Sobic006G217400 Sobic002G153600--Sobic006G217400 Sobic004G130500 Sobic004G130500 Sobic002G153600--Sobic004G130500 Sobic006G035350 Sobic006G035350 Sobic002G153600--Sobic006G035350 Sobic004G127733 Sobic004G127733 Sobic002G153600--Sobic004G127733 SobicK031400 SobicK031400 Sobic002G153600--SobicK031400 Sobic004G260250 Sobic004G260250 Sobic002G153600--Sobic004G260250 Sobic010G132400 Sobic010G132400 Sobic002G153600--Sobic010G132400 Sobic004G157700--Sobic006G058400 Sobic004G157700--Sobic009G027200 Sobic003G366700 Sobic003G366700 Sobic004G157700--Sobic003G366700 Sobic001G291400 Sobic001G291400 Sobic004G157700--Sobic001G291400 Sobic001G041900 Sobic001G041900 Sobic004G157700--Sobic001G041900 Sobic001G321700 Sobic001G321700 Sobic004G157700--Sobic001G321700 Sobic004G128100 Sobic004G128100 Sobic004G157700--Sobic004G128100 Sobic003G350200 Sobic003G350200 Sobic004G157700--Sobic003G350200 Sobic004G157700--Sobic004G243000 Sobic004G299300--Sobic004G128100 Sobic004G299300--Sobic009G105500 Sobic004G299300--Sobic006G058400 Sobic004G087700 Sobic004G087700 Sobic004G299300--Sobic004G087700 Sobic003G267300 Sobic003G267300 Sobic004G299300--Sobic003G267300 Sobic003G413600 Sobic003G413600 Sobic004G299300--Sobic003G413600 Sobic003G279700 Sobic003G279700 Sobic004G299300--Sobic003G279700 Sobic009G140150 Sobic009G140150 Sobic004G299300--Sobic009G140150 Sobic004G299300--Sobic009G027200 Sobic009G027200--Sobic006G217400 Sobic007G200700 Sobic007G200700 Sobic009G027200--Sobic007G200700 Sobic009G027200--Sobic003G226600 Sobic008G093300 Sobic008G093300 Sobic009G027200--Sobic008G093300 Sobic004G115100 Sobic004G115100 Sobic009G027200--Sobic004G115100 Sobic006G029850 Sobic006G029850 Sobic009G027200--Sobic006G029850 Sobic001G207301 Sobic001G207301 Sobic009G027200--Sobic001G207301 Sobic009G027200--Sobic006G035350 Sobic008G100201 Sobic008G100201 Sobic009G027200--Sobic008G100201 Sobic009G105500--Sobic004G299300 Sobic009G105500--Sobic004G128100 Sobic009G105500--Sobic009G140150 Sobic009G105500--Sobic003G413600 Sobic009G105500--Sobic006G058400 Sobic001G491800 Sobic001G491800 Sobic009G105500--Sobic001G491800 Sobic009G105500--Sobic004G087700 Sobic009G105500--Sobic009G148800 Sobic003G097000 Sobic003G097000 Sobic009G105500--Sobic003G097000
Octagon: transcription factors


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