Gene annotation
Transcriptome id Sobic.004G157700.1,Sobic.004G157700.2
Synonym Sb04g021040
Functional annotation hydroxyproline-rich glycoprotein family protein, putative, expressed
UniProt A0A1Z5RNH2 , C5XT76
Pfam PF16746
Panther DB PTHR34119 PTHR34119:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33490 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os04g32370.1 : hydroxyproline-rich glycoprotein family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020429 , Zm00025a031342
Brachypodium KQJ99620
Barley HORVU3Hr1G086400.31 , HORVU3Hr1G086400.30 , HORVU3Hr1G086400.23 , HORVU3Hr1G086400.24 , HORVU3Hr1G086400.25 , HORVU3Hr1G086400.29 , HORVU3Hr1G086400.12 , HORVU3Hr1G086400.14 , HORVU3Hr1G086400.19 , HORVU3Hr1G086400.13 , HORVU3Hr1G086400.11 , HORVU3Hr1G086400.10 , HORVU3Hr1G086400.17 , HORVU3Hr1G086400.16 , HORVU3Hr1G086400.15 , HORVU3Hr1G086400.9 , HORVU3Hr1G086400.8 , HORVU3Hr1G086400.3 , HORVU3Hr1G086400.2 , HORVU3Hr1G086400.1 , HORVU3Hr1G086400.5 , HORVU3Hr1G086400.4
Wheat TraesCS3B02G391400 , TraesCS3A02G358600
Populus -


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cDNA sequences
Sobic.004G157700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
2 Sobic.009G027200 tetraspanin family protein, putative, expressed -
3 Sobic.003G366700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 3-O-glucosyltransferase, putative, expressed -
4 Sobic.001G291400 methyltransferase, putative, expressed -
5 Sobic.001G041900 phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
6 Sobic.001G321700 dehydration response related protein, putative, expressed -
7 Sobic.004G128100 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
8 Sobic.003G350200 - -
9 Sobic.004G243000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@metalloendoproteinase 1 precursor, putative, expressed -
10 Sobic.006G095100 ORG4, putative, expressed -
11 Sobic.006G233800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
12 Sobic.004G278600 OsFBX59 - F-box domain containing protein, expressed -
13 Sobic.008G040800 OsFBX396 - F-box domain containing protein, expressed -
14 Sobic.009G074200 - -
15 Sobic.004G299300 protein kinase domain containing protein, expressed -
16 Sobic.006G164500 protein kinase domain containing protein, expressed -
17 Sobic.004G262800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@class E vacuolar protein-sorting machinery protein HSE1, putative, expressed -
18 Sobic.003G323800 expressed protein -
19 Sobic.009G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@D-mannose binding lectin family protein, expressed -
20 Sobic.003G226600 WRKY12, expressed -


Gene co-expression network
sample Sobic004G157700 Sobic004G157700 Sobic006G058400 Sobic006G058400 Sobic004G157700--Sobic006G058400 Sobic009G027200 Sobic009G027200 Sobic004G157700--Sobic009G027200 Sobic003G366700 Sobic003G366700 Sobic004G157700--Sobic003G366700 Sobic001G291400 Sobic001G291400 Sobic004G157700--Sobic001G291400 Sobic001G041900 Sobic001G041900 Sobic004G157700--Sobic001G041900 Sobic001G321700 Sobic001G321700 Sobic004G157700--Sobic001G321700 Sobic004G128100 Sobic004G128100 Sobic004G157700--Sobic004G128100 Sobic003G350200 Sobic003G350200 Sobic004G157700--Sobic003G350200 Sobic004G243000 Sobic004G243000 Sobic004G157700--Sobic004G243000 Sobic008G042300 Sobic008G042300 Sobic006G058400--Sobic008G042300 Sobic010G192700 Sobic010G192700 Sobic006G058400--Sobic010G192700 Sobic003G363600 Sobic003G363600 Sobic006G058400--Sobic003G363600 Sobic004G341600 Sobic004G341600 Sobic006G058400--Sobic004G341600 Sobic002G153600 Sobic002G153600 Sobic006G058400--Sobic002G153600 Sobic006G058400--Sobic004G157700 Sobic004G299300 Sobic004G299300 Sobic006G058400--Sobic004G299300 Sobic006G058400--Sobic009G027200 Sobic009G105500 Sobic009G105500 Sobic006G058400--Sobic009G105500 Sobic006G217400 Sobic006G217400 Sobic009G027200--Sobic006G217400 Sobic007G200700 Sobic007G200700 Sobic009G027200--Sobic007G200700 Sobic003G226600 Sobic003G226600 Sobic009G027200--Sobic003G226600 Sobic008G093300 Sobic008G093300 Sobic009G027200--Sobic008G093300 Sobic004G115100 Sobic004G115100 Sobic009G027200--Sobic004G115100 Sobic006G029850 Sobic006G029850 Sobic009G027200--Sobic006G029850 Sobic001G207301 Sobic001G207301 Sobic009G027200--Sobic001G207301 Sobic006G035350 Sobic006G035350 Sobic009G027200--Sobic006G035350 Sobic008G100201 Sobic008G100201 Sobic009G027200--Sobic008G100201 Sobic002G024300 Sobic002G024300 Sobic003G366700--Sobic002G024300 Sobic003G366700--Sobic004G157700 Sobic004G304550 Sobic004G304550 Sobic003G366700--Sobic004G304550 Sobic006G233800 Sobic006G233800 Sobic003G366700--Sobic006G233800 Sobic010G091100 Sobic010G091100 Sobic003G366700--Sobic010G091100 Sobic001G319000 Sobic001G319000 Sobic003G366700--Sobic001G319000 Sobic003G366700--Sobic001G321700 Sobic009G097100 Sobic009G097100 Sobic003G366700--Sobic009G097100 Sobic006G164500 Sobic006G164500 Sobic003G366700--Sobic006G164500 Sobic006G095100 Sobic006G095100 Sobic001G291400--Sobic006G095100 Sobic004G343400 Sobic004G343400 Sobic001G291400--Sobic004G343400 Sobic003G030500 Sobic003G030500 Sobic001G291400--Sobic003G030500 Sobic001G291400--Sobic004G157700 Sobic006G148400 Sobic006G148400 Sobic001G291400--Sobic006G148400 Sobic005G086250 Sobic005G086250 Sobic001G291400--Sobic005G086250 Sobic005G119001 Sobic005G119001 Sobic001G291400--Sobic005G119001 Sobic001G087800 Sobic001G087800 Sobic001G291400--Sobic001G087800 Sobic002G224800 Sobic002G224800 Sobic001G291400--Sobic002G224800 Sobic009G050600 Sobic009G050600 Sobic001G041900--Sobic009G050600 Sobic001G041900--Sobic006G095100 Sobic004G023600 Sobic004G023600 Sobic001G041900--Sobic004G023600 Sobic004G199500 Sobic004G199500 Sobic001G041900--Sobic004G199500 Sobic001G041900--Sobic001G207301 Sobic001G041900--Sobic004G128100 Sobic001G102200 Sobic001G102200 Sobic001G041900--Sobic001G102200 Sobic007G130500 Sobic007G130500 Sobic001G041900--Sobic007G130500 Sobic001G041900--Sobic009G027200 Sobic004G106200 Sobic004G106200 Sobic001G321700--Sobic004G106200 Sobic009G111800 Sobic009G111800 Sobic001G321700--Sobic009G111800 Sobic001G476100 Sobic001G476100 Sobic001G321700--Sobic001G476100 Sobic010G065001 Sobic010G065001 Sobic001G321700--Sobic010G065001 Sobic004G109100 Sobic004G109100 Sobic001G321700--Sobic004G109100 Sobic001G321700--Sobic001G319000 Sobic008G081500 Sobic008G081500 Sobic001G321700--Sobic008G081500 Sobic009G074200 Sobic009G074200 Sobic001G321700--Sobic009G074200 Sobic004G242900 Sobic004G242900 Sobic001G321700--Sobic004G242900 Sobic010G056100 Sobic010G056100 Sobic004G128100--Sobic010G056100 Sobic004G128100--Sobic004G299300 Sobic004G128100--Sobic009G105500 Sobic003G097000 Sobic003G097000 Sobic004G128100--Sobic003G097000 Sobic004G128100--Sobic004G199500 Sobic004G128100--Sobic009G027200 Sobic004G128100--Sobic001G041900 Sobic003G301400 Sobic003G301400 Sobic004G128100--Sobic003G301400 Sobic003G395600 Sobic003G395600 Sobic004G128100--Sobic003G395600 Sobic001G060732 Sobic001G060732 Sobic003G350200--Sobic001G060732 Sobic004G116900 Sobic004G116900 Sobic003G350200--Sobic004G116900 Sobic005G118900 Sobic005G118900 Sobic003G350200--Sobic005G118900 Sobic009G051500 Sobic009G051500 Sobic003G350200--Sobic009G051500 Sobic003G350200--Sobic009G027200 Sobic004G112800 Sobic004G112800 Sobic003G350200--Sobic004G112800 Sobic002G139700 Sobic002G139700 Sobic003G350200--Sobic002G139700 Sobic006G141100 Sobic006G141100 Sobic003G350200--Sobic006G141100 Sobic001G490200 Sobic001G490200 Sobic003G350200--Sobic001G490200 Sobic004G338200 Sobic004G338200 Sobic004G243000--Sobic004G338200 Sobic004G243000--Sobic006G233800 Sobic007G194400 Sobic007G194400 Sobic004G243000--Sobic007G194400 Sobic002G373900 Sobic002G373900 Sobic004G243000--Sobic002G373900 Sobic010G036400 Sobic010G036400 Sobic004G243000--Sobic010G036400 Sobic003G314200 Sobic003G314200 Sobic004G243000--Sobic003G314200 Sobic003G268800 Sobic003G268800 Sobic004G243000--Sobic003G268800 Sobic009G215400 Sobic009G215400 Sobic004G243000--Sobic009G215400 Sobic003G323800 Sobic003G323800 Sobic004G243000--Sobic003G323800
Octagon: transcription factors


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