Gene annotation
Transcriptome id Sobic.004G243000.1
Synonym Sb04g028370
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
metalloendoproteinase 1 precursor, putative, expressed
UniProt A0A1Z5RPH1
Pfam PF01471 PF00413
Panther DB PTHR10201 PTHR10201:SF149
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006508proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G70170 : matrix metalloproteinase
RAP-DB (Rice) LOC_Os02g50730.1 : metalloendoproteinase 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a021989
Brachypodium -
Barley HORVU6Hr1G076510.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G338200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsWAK24 - OsWAK receptor-like protein kinase, expressed -
2 Sobic.006G233800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
3 Sobic.007G194400 exo70 exocyst complex subunit domain containing protein, expressed -
4 Sobic.002G373900 lung seven transmembrane domain containing protein, putative, expressed -
5 Sobic.010G036400 expressed protein -
6 Sobic.003G314200 TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed -
7 Sobic.003G268800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
8 Sobic.009G215400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.003G323800 expressed protein -
10 Sobic.003G319200 EF hand family protein, putative, expressed -
11 Sobic.001G317700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.007G124400 UNE2, putative, expressed -
13 Sobic.004G046400 rhodanese-like domain containing protein, putative, expressed -
14 Sobic.001G020200 ZOS3-24 - C2H2 zinc finger protein, expressed -
15 Sobic.003G212300 mitochondrial chaperone BCS1, putative, expressed -
16 Sobic.001G192400 OsFBDUF49 - F-box and DUF domain containing protein, expressed -
17 Sobic.004G052000 protein kinase, putative, expressed -
18 Sobic.003G249500 expressed protein -
19 Sobic.009G161700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@COX VIIa, putative, expressed -
20 Sobic.007G085300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY25, expressed -


Gene co-expression network
sample Sobic004G243000 Sobic004G243000 Sobic004G338200 Sobic004G338200 Sobic004G243000--Sobic004G338200 Sobic006G233800 Sobic006G233800 Sobic004G243000--Sobic006G233800 Sobic007G194400 Sobic007G194400 Sobic004G243000--Sobic007G194400 Sobic002G373900 Sobic002G373900 Sobic004G243000--Sobic002G373900 Sobic010G036400 Sobic010G036400 Sobic004G243000--Sobic010G036400 Sobic003G314200 Sobic003G314200 Sobic004G243000--Sobic003G314200 Sobic003G268800 Sobic003G268800 Sobic004G243000--Sobic003G268800 Sobic009G215400 Sobic009G215400 Sobic004G243000--Sobic009G215400 Sobic003G323800 Sobic003G323800 Sobic004G243000--Sobic003G323800 Sobic001G020200 Sobic001G020200 Sobic004G338200--Sobic001G020200 Sobic004G338200--Sobic004G243000 Sobic004G338200--Sobic003G314200 Sobic007G227500 Sobic007G227500 Sobic004G338200--Sobic007G227500 Sobic008G040800 Sobic008G040800 Sobic004G338200--Sobic008G040800 Sobic009G182500 Sobic009G182500 Sobic004G338200--Sobic009G182500 Sobic004G338200--Sobic003G268800 Sobic009G161700 Sobic009G161700 Sobic004G338200--Sobic009G161700 Sobic006G094800 Sobic006G094800 Sobic004G338200--Sobic006G094800 Sobic006G233800--Sobic002G373900 Sobic003G249500 Sobic003G249500 Sobic006G233800--Sobic003G249500 Sobic005G013901 Sobic005G013901 Sobic006G233800--Sobic005G013901 Sobic002G025000 Sobic002G025000 Sobic006G233800--Sobic002G025000 Sobic009G074200 Sobic009G074200 Sobic006G233800--Sobic009G074200 Sobic004G234766 Sobic004G234766 Sobic006G233800--Sobic004G234766 Sobic007G201200 Sobic007G201200 Sobic006G233800--Sobic007G201200 Sobic007G149750 Sobic007G149750 Sobic006G233800--Sobic007G149750 Sobic003G169400 Sobic003G169400 Sobic006G233800--Sobic003G169400 Sobic007G077200 Sobic007G077200 Sobic007G194400--Sobic007G077200 Sobic004G049400 Sobic004G049400 Sobic007G194400--Sobic004G049400 Sobic002G377100 Sobic002G377100 Sobic007G194400--Sobic002G377100 Sobic007G085300 Sobic007G085300 Sobic007G194400--Sobic007G085300 Sobic007G194400--Sobic004G243000 Sobic002G042100 Sobic002G042100 Sobic007G194400--Sobic002G042100 Sobic010G238600 Sobic010G238600 Sobic007G194400--Sobic010G238600 Sobic004G052000 Sobic004G052000 Sobic007G194400--Sobic004G052000 Sobic010G083600 Sobic010G083600 Sobic007G194400--Sobic010G083600 Sobic002G373900--Sobic006G233800 Sobic004G191901 Sobic004G191901 Sobic002G373900--Sobic004G191901 Sobic002G373900--Sobic009G074200 Sobic002G373900--Sobic003G249500 Sobic002G385601 Sobic002G385601 Sobic002G373900--Sobic002G385601 Sobic003G352000 Sobic003G352000 Sobic002G373900--Sobic003G352000 Sobic001G450900 Sobic001G450900 Sobic002G373900--Sobic001G450900 SobicK029400 SobicK029400 Sobic002G373900--SobicK029400 Sobic006G057100 Sobic006G057100 Sobic002G373900--Sobic006G057100 Sobic001G317700 Sobic001G317700 Sobic010G036400--Sobic001G317700 Sobic010G036400--Sobic004G243000 Sobic010G036400--Sobic007G085300 Sobic010G036400--Sobic005G013901 Sobic001G073800 Sobic001G073800 Sobic010G036400--Sobic001G073800 Sobic004G231001 Sobic004G231001 Sobic010G036400--Sobic004G231001 Sobic010G036400--Sobic003G323800 Sobic010G036400--Sobic003G314200 Sobic006G105200 Sobic006G105200 Sobic010G036400--Sobic006G105200 Sobic003G314200--Sobic008G040800 Sobic006G205800 Sobic006G205800 Sobic003G314200--Sobic006G205800 Sobic003G314200--Sobic006G094800 Sobic001G148000 Sobic001G148000 Sobic003G314200--Sobic001G148000 Sobic003G226600 Sobic003G226600 Sobic003G314200--Sobic003G226600 Sobic009G027200 Sobic009G027200 Sobic003G314200--Sobic009G027200 Sobic001G207301 Sobic001G207301 Sobic003G314200--Sobic001G207301 Sobic001G501701 Sobic001G501701 Sobic003G314200--Sobic001G501701 Sobic003G314200--Sobic004G338200 Sobic003G268800--Sobic007G077200 Sobic003G268800--Sobic004G338200 Sobic003G268800--Sobic004G243000 Sobic003G268800--Sobic007G194400 Sobic003G268800--Sobic001G317700 Sobic001G259600 Sobic001G259600 Sobic003G268800--Sobic001G259600 Sobic002G342400 Sobic002G342400 Sobic003G268800--Sobic002G342400 Sobic009G141201 Sobic009G141201 Sobic003G268800--Sobic009G141201 Sobic003G268700 Sobic003G268700 Sobic003G268800--Sobic003G268700 Sobic009G215400--Sobic003G323800 Sobic009G215400--Sobic002G042100 Sobic009G215400--Sobic004G243000 Sobic003G303100 Sobic003G303100 Sobic009G215400--Sobic003G303100 Sobic003G250600 Sobic003G250600 Sobic009G215400--Sobic003G250600 Sobic001G279500 Sobic001G279500 Sobic009G215400--Sobic001G279500 Sobic002G235500 Sobic002G235500 Sobic009G215400--Sobic002G235500 Sobic001G299500 Sobic001G299500 Sobic009G215400--Sobic001G299500 Sobic006G162100 Sobic006G162100 Sobic009G215400--Sobic006G162100 Sobic003G323800--Sobic009G215400 Sobic003G323800--Sobic002G235500 Sobic003G323800--Sobic004G243000 Sobic003G323800--Sobic010G036400 Sobic001G299200 Sobic001G299200 Sobic003G323800--Sobic001G299200 Sobic003G323800--Sobic002G042100 Sobic003G323800--Sobic001G299500 Sobic003G323800--Sobic002G377100 Sobic003G426300 Sobic003G426300 Sobic003G323800--Sobic003G426300
Octagon: transcription factors


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