Gene annotation
| Transcriptome id | Sobic.009G215400.1 |
|---|---|
| Synonym | Sb09g027080 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) hydrolase, alpha/beta fold family domain containing protein, expressed |
| UniProt | A0A1B6P9S3 |
| Pfam | PF00561 |
| Panther DB | PTHR10992 PTHR10992:SF699 |
| NCBI CDD | KOG4178; Soluble epoxide hydrolase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G53050 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g46460.1 : hydrolase, alpha/beta fold family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a034229 , Zm00025a044415 , Zm00025a036474 |
| Brachypodium | KQK05119 , KQK05120 |
| Barley | HORVU1Hr1G079380.16 , HORVU1Hr1G079380.17 , HORVU1Hr1G079380.14 , HORVU1Hr1G079380.15 , HORVU1Hr1G079380.12 , HORVU1Hr1G079380.10 , HORVU1Hr1G079380.6 , HORVU1Hr1G079380.7 , HORVU1Hr1G079380.1 , HORVU1Hr1G079380.2 , HORVU1Hr1G079380.3 , HORVU1Hr1G079380.8 , HORVU1Hr1G079380.9 |
| Wheat | TraesCS1B02G381000 , TraesCS1B02G381000 , TraesCS1B02G381000 , TraesCS1D02G368900 , TraesCS1D02G368900 , TraesCS1A02G363800 , TraesCS1A02G363800 , TraesCS1A02G363800 , TraesCS1A02G363800 |
| Populus | - |
JBrowse
| Sobic.009G215400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G323800 | expressed protein | - |
| 2 | Sobic.002G042100 | gibberellin receptor GID1L2, putative, expressed | - |
| 3 | Sobic.004G243000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@metalloendoproteinase 1 precursor, putative, expressed | - |
| 4 | Sobic.003G303100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 5 | Sobic.003G250600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsGrx_I1 - glutaredoxin subgroup III, expressed | - |
| 6 | Sobic.001G279500 | VQ domain containing protein, putative, expressed | - |
| 7 | Sobic.002G235500 | bZIP transcription factor domain containing protein, expressed | - |
| 8 | Sobic.001G299500 | expressed protein | - |
| 9 | Sobic.006G162100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed | - |
| 10 | Sobic.010G036400 | expressed protein | - |
| 11 | Sobic.004G241100 | NHL repeat-containing protein, putative, expressed | - |
| 12 | Sobic.003G380900 | Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659872)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed | - |
| 13 | Sobic.001G231400 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 14 | Sobic.002G251000 | expressed protein | - |
| 15 | Sobic.003G279500 | serine acetyltransferase 1(PubMedID : 26465154)@serine acetyltransferase protein, putative, expressed | K00640: serine O-acetyltransferase |
| 16 | Sobic.006G191600 | expressed protein | - |
| 17 | Sobic.001G100600 | expressed protein | - |
| 18 | Sobic.003G382600 | ARGOS, putative, expressed | - |
| 19 | Sobic.004G189400 | expressed protein | - |
| 20 | Sobic.002G055700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
Gene co-expression network
Octagon: transcription factors
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