Gene annotation
Transcriptome id Sobic.003G024900.1
Synonym PEC12, ECI2, Sb03g002390, ECHIB, ATECI2, IBR10
Functional annotation carnitine racemase like protein, putative, expressed
UniProt C5XL68
Pfam PF00378
Panther DB PTHR11941 PTHR11941:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G65520 : delta(3), delta(2)-enoyl CoA isomerase 1
RAP-DB (Rice) LOC_Os01g10830.1 : carnitine racemase like protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G026030.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G311300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
3 Sobic.007G108700 expressed protein -
4 Sobic.002G348500 expressed protein -
5 Sobic.004G287000 rho-GTPase-activating protein-related, putative, expressed -
6 Sobic.003G212300 mitochondrial chaperone BCS1, putative, expressed -
7 Sobic.001G108800 expressed protein -
8 Sobic.005G013600 WRKY46, expressed -
9 Sobic.001G021900 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
10 Sobic.010G267100 zinc finger family protein, putative, expressed -
11 Sobic.009G141201 - -
12 Sobic.002G042100 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.001G272700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.004G271100 expressed protein -
15 Sobic.004G280000 Hydroxyjasmonate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
16 Sobic.001G423500 expressed protein -
17 Sobic.003G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
18 Sobic.003G319200 EF hand family protein, putative, expressed -
19 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
20 Sobic.008G070900 expressed protein -


Gene co-expression network
sample Sobic003G024900 Sobic003G024900 Sobic002G311300 Sobic002G311300 Sobic003G024900--Sobic002G311300 Sobic002G235500 Sobic002G235500 Sobic003G024900--Sobic002G235500 Sobic007G108700 Sobic007G108700 Sobic003G024900--Sobic007G108700 Sobic002G348500 Sobic002G348500 Sobic003G024900--Sobic002G348500 Sobic004G287000 Sobic004G287000 Sobic003G024900--Sobic004G287000 Sobic003G212300 Sobic003G212300 Sobic003G024900--Sobic003G212300 Sobic001G108800 Sobic001G108800 Sobic003G024900--Sobic001G108800 Sobic005G013600 Sobic005G013600 Sobic003G024900--Sobic005G013600 Sobic001G021900 Sobic001G021900 Sobic003G024900--Sobic001G021900 Sobic002G311300--Sobic003G024900 Sobic010G207250 Sobic010G207250 Sobic002G311300--Sobic010G207250 Sobic003G265150 Sobic003G265150 Sobic002G311300--Sobic003G265150 Sobic002G311300--Sobic004G287000 Sobic002G361600 Sobic002G361600 Sobic002G311300--Sobic002G361600 Sobic004G271100 Sobic004G271100 Sobic002G311300--Sobic004G271100 Sobic002G311300--Sobic002G348500 Sobic002G145600 Sobic002G145600 Sobic002G311300--Sobic002G145600 Sobic004G109300 Sobic004G109300 Sobic002G311300--Sobic004G109300 Sobic010G239300 Sobic010G239300 Sobic002G235500--Sobic010G239300 Sobic001G317200 Sobic001G317200 Sobic002G235500--Sobic001G317200 Sobic002G415100 Sobic002G415100 Sobic002G235500--Sobic002G415100 Sobic006G099900 Sobic006G099900 Sobic002G235500--Sobic006G099900 Sobic009G164600 Sobic009G164600 Sobic002G235500--Sobic009G164600 Sobic002G235500--Sobic001G021900 Sobic001G325000 Sobic001G325000 Sobic002G235500--Sobic001G325000 Sobic003G252800 Sobic003G252800 Sobic002G235500--Sobic003G252800 Sobic007G141500 Sobic007G141500 Sobic002G235500--Sobic007G141500 Sobic004G011100 Sobic004G011100 Sobic007G108700--Sobic004G011100 Sobic003G139300 Sobic003G139300 Sobic007G108700--Sobic003G139300 Sobic003G368600 Sobic003G368600 Sobic007G108700--Sobic003G368600 Sobic007G108700--Sobic001G021900 Sobic002G356500 Sobic002G356500 Sobic007G108700--Sobic002G356500 Sobic001G075300 Sobic001G075300 Sobic007G108700--Sobic001G075300 Sobic007G108700--Sobic002G235500 Sobic010G204200 Sobic010G204200 Sobic007G108700--Sobic010G204200 Sobic007G108700--Sobic003G024900 Sobic006G097000 Sobic006G097000 Sobic002G348500--Sobic006G097000 Sobic009G065500 Sobic009G065500 Sobic002G348500--Sobic009G065500 Sobic001G100600 Sobic001G100600 Sobic002G348500--Sobic001G100600 Sobic002G354100 Sobic002G354100 Sobic002G348500--Sobic002G354100 Sobic004G229800 Sobic004G229800 Sobic002G348500--Sobic004G229800 Sobic003G322900 Sobic003G322900 Sobic002G348500--Sobic003G322900 Sobic006G132900 Sobic006G132900 Sobic002G348500--Sobic006G132900 Sobic001G435000 Sobic001G435000 Sobic002G348500--Sobic001G435000 Sobic010G259500 Sobic010G259500 Sobic002G348500--Sobic010G259500 Sobic004G287000--Sobic005G013600 Sobic008G050500 Sobic008G050500 Sobic004G287000--Sobic008G050500 Sobic004G287000--Sobic002G235500 Sobic004G260300 Sobic004G260300 Sobic004G287000--Sobic004G260300 Sobic004G287000--Sobic001G021900 Sobic006G149400 Sobic006G149400 Sobic004G287000--Sobic006G149400 Sobic003G288100 Sobic003G288100 Sobic004G287000--Sobic003G288100 Sobic010G213800 Sobic010G213800 Sobic004G287000--Sobic010G213800 Sobic004G145900 Sobic004G145900 Sobic004G287000--Sobic004G145900 Sobic003G212300--Sobic007G108700 Sobic004G046400 Sobic004G046400 Sobic003G212300--Sobic004G046400 Sobic005G096600 Sobic005G096600 Sobic003G212300--Sobic005G096600 Sobic003G212300--Sobic003G024900 Sobic003G212300--Sobic002G356500 Sobic004G163400 Sobic004G163400 Sobic003G212300--Sobic004G163400 Sobic003G212300--Sobic001G021900 Sobic003G212300--Sobic002G235500 Sobic002G042100 Sobic002G042100 Sobic003G212300--Sobic002G042100 Sobic001G500000 Sobic001G500000 Sobic001G108800--Sobic001G500000 Sobic004G310200 Sobic004G310200 Sobic001G108800--Sobic004G310200 Sobic003G192100 Sobic003G192100 Sobic001G108800--Sobic003G192100 Sobic009G074100 Sobic009G074100 Sobic001G108800--Sobic009G074100 Sobic001G231700 Sobic001G231700 Sobic001G108800--Sobic001G231700 Sobic003G084400 Sobic003G084400 Sobic001G108800--Sobic003G084400 Sobic005G093000 Sobic005G093000 Sobic001G108800--Sobic005G093000 Sobic001G192600 Sobic001G192600 Sobic001G108800--Sobic001G192600 Sobic004G340900 Sobic004G340900 Sobic001G108800--Sobic004G340900 Sobic009G217700 Sobic009G217700 Sobic005G013600--Sobic009G217700 Sobic001G449600 Sobic001G449600 Sobic005G013600--Sobic001G449600 Sobic009G139700 Sobic009G139700 Sobic005G013600--Sobic009G139700 Sobic007G005700 Sobic007G005700 Sobic005G013600--Sobic007G005700 Sobic003G255200 Sobic003G255200 Sobic005G013600--Sobic003G255200 Sobic007G166000 Sobic007G166000 Sobic005G013600--Sobic007G166000 Sobic003G364000 Sobic003G364000 Sobic005G013600--Sobic003G364000 Sobic005G005600 Sobic005G005600 Sobic005G013600--Sobic005G005600 Sobic003G202000 Sobic003G202000 Sobic005G013600--Sobic003G202000 Sobic001G021900--Sobic002G235500 Sobic003G117600 Sobic003G117600 Sobic001G021900--Sobic003G117600 Sobic001G021900--Sobic003G139300 Sobic001G325400 Sobic001G325400 Sobic001G021900--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic001G021900--Sobic009G035200 Sobic010G185000 Sobic010G185000 Sobic001G021900--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic001G021900--Sobic001G119000 Sobic001G082600 Sobic001G082600 Sobic001G021900--Sobic001G082600 Sobic006G092500 Sobic006G092500 Sobic001G021900--Sobic006G092500
Octagon: transcription factors


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