Gene annotation
Transcriptome id Sobic.001G423500.1
Synonym Sb01g039820
Functional annotation expressed protein
UniProt C5WQ20
Pfam -
Panther DB PTHR33912 PTHR33912:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g16410.1 : expressed protein
MaizeGDB (Corn) Zm00025a001799
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G423500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G077650 - -
2 Sobic.003G024900 carnitine racemase like protein, putative, expressed -
3 Sobic.010G075600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.002G070200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G438600 S-locus lectin protein kinase family protein, putative, expressed -
6 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
7 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
8 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.006G246100 one cut domain family member 3, putative, expressed -
10 Sobic.002G319100 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
11 Sobic.004G233400 - -
12 Sobic.002G414850 - -
13 Sobic.006G010700 GA11916-PA, putative, expressed -
14 Sobic.004G245500 expressed protein -
15 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.001G194401 - -
17 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -
18 Sobic.001G430600 cytochrome P450, putative, expressed -
19 Sobic.006G161100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR11 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
20 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase


Gene co-expression network
sample Sobic001G423500 Sobic001G423500 Sobic010G077650 Sobic010G077650 Sobic001G423500--Sobic010G077650 Sobic003G024900 Sobic003G024900 Sobic001G423500--Sobic003G024900 Sobic010G075600 Sobic010G075600 Sobic001G423500--Sobic010G075600 Sobic002G070200 Sobic002G070200 Sobic001G423500--Sobic002G070200 Sobic003G438600 Sobic003G438600 Sobic001G423500--Sobic003G438600 Sobic001G192600 Sobic001G192600 Sobic001G423500--Sobic001G192600 Sobic003G277500 Sobic003G277500 Sobic001G423500--Sobic003G277500 Sobic005G080200 Sobic005G080200 Sobic001G423500--Sobic005G080200 Sobic006G246100 Sobic006G246100 Sobic001G423500--Sobic006G246100 Sobic004G159400 Sobic004G159400 Sobic010G077650--Sobic004G159400 Sobic003G273000 Sobic003G273000 Sobic010G077650--Sobic003G273000 Sobic001G508466 Sobic001G508466 Sobic010G077650--Sobic001G508466 Sobic001G197000 Sobic001G197000 Sobic010G077650--Sobic001G197000 Sobic002G355100 Sobic002G355100 Sobic010G077650--Sobic002G355100 Sobic004G228700 Sobic004G228700 Sobic010G077650--Sobic004G228700 Sobic010G031000 Sobic010G031000 Sobic010G077650--Sobic010G031000 Sobic001G513300 Sobic001G513300 Sobic010G077650--Sobic001G513300 Sobic004G030501 Sobic004G030501 Sobic010G077650--Sobic004G030501 Sobic002G311300 Sobic002G311300 Sobic003G024900--Sobic002G311300 Sobic002G235500 Sobic002G235500 Sobic003G024900--Sobic002G235500 Sobic007G108700 Sobic007G108700 Sobic003G024900--Sobic007G108700 Sobic002G348500 Sobic002G348500 Sobic003G024900--Sobic002G348500 Sobic004G287000 Sobic004G287000 Sobic003G024900--Sobic004G287000 Sobic003G212300 Sobic003G212300 Sobic003G024900--Sobic003G212300 Sobic001G108800 Sobic001G108800 Sobic003G024900--Sobic001G108800 Sobic005G013600 Sobic005G013600 Sobic003G024900--Sobic005G013600 Sobic001G021900 Sobic001G021900 Sobic003G024900--Sobic001G021900 Sobic004G297100 Sobic004G297100 Sobic010G075600--Sobic004G297100 Sobic010G075600--Sobic005G080200 Sobic007G123300 Sobic007G123300 Sobic010G075600--Sobic007G123300 Sobic006G216700 Sobic006G216700 Sobic010G075600--Sobic006G216700 Sobic009G221400 Sobic009G221400 Sobic010G075600--Sobic009G221400 Sobic003G339500 Sobic003G339500 Sobic010G075600--Sobic003G339500 Sobic001G454100 Sobic001G454100 Sobic010G075600--Sobic001G454100 Sobic003G285500 Sobic003G285500 Sobic010G075600--Sobic003G285500 Sobic010G075600--Sobic003G277500 Sobic004G186500 Sobic004G186500 Sobic002G070200--Sobic004G186500 Sobic003G162700 Sobic003G162700 Sobic002G070200--Sobic003G162700 Sobic002G373001 Sobic002G373001 Sobic002G070200--Sobic002G373001 Sobic002G333400 Sobic002G333400 Sobic002G070200--Sobic002G333400 Sobic001G407800 Sobic001G407800 Sobic002G070200--Sobic001G407800 Sobic008G044300 Sobic008G044300 Sobic002G070200--Sobic008G044300 Sobic002G070200--Sobic001G192600 Sobic001G449700 Sobic001G449700 Sobic002G070200--Sobic001G449700 Sobic005G186100 Sobic005G186100 Sobic002G070200--Sobic005G186100 Sobic008G017400 Sobic008G017400 Sobic003G438600--Sobic008G017400 Sobic010G220966 Sobic010G220966 Sobic003G438600--Sobic010G220966 Sobic005G123000 Sobic005G123000 Sobic003G438600--Sobic005G123000 Sobic003G438600--Sobic001G423500 Sobic009G168500 Sobic009G168500 Sobic003G438600--Sobic009G168500 Sobic004G020500 Sobic004G020500 Sobic003G438600--Sobic004G020500 Sobic010G030600 Sobic010G030600 Sobic003G438600--Sobic010G030600 Sobic001G052500 Sobic001G052500 Sobic003G438600--Sobic001G052500 Sobic002G117300 Sobic002G117300 Sobic003G438600--Sobic002G117300 Sobic002G192000 Sobic002G192000 Sobic001G192600--Sobic002G192000 Sobic001G367600 Sobic001G367600 Sobic001G192600--Sobic001G367600 Sobic001G038900 Sobic001G038900 Sobic001G192600--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic001G192600--Sobic006G158600 Sobic001G423800 Sobic001G423800 Sobic001G192600--Sobic001G423800 Sobic001G055600 Sobic001G055600 Sobic001G192600--Sobic001G055600 Sobic001G481100 Sobic001G481100 Sobic001G192600--Sobic001G481100 Sobic001G192600--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic001G192600--Sobic002G353900 Sobic006G044932 Sobic006G044932 Sobic003G277500--Sobic006G044932 Sobic004G010300 Sobic004G010300 Sobic003G277500--Sobic004G010300 Sobic003G277500--Sobic003G162700 Sobic003G277500--Sobic002G070200 Sobic002G407700 Sobic002G407700 Sobic003G277500--Sobic002G407700 Sobic009G232266 Sobic009G232266 Sobic003G277500--Sobic009G232266 Sobic003G277500--Sobic002G373001 Sobic002G333300 Sobic002G333300 Sobic003G277500--Sobic002G333300 Sobic004G195000 Sobic004G195000 Sobic003G277500--Sobic004G195000 Sobic005G080200--Sobic006G246100 Sobic001G432700 Sobic001G432700 Sobic005G080200--Sobic001G432700 Sobic005G080200--Sobic001G192600 Sobic001G195100 Sobic001G195100 Sobic005G080200--Sobic001G195100 Sobic010G194300 Sobic010G194300 Sobic005G080200--Sobic010G194300 Sobic003G037500 Sobic003G037500 Sobic005G080200--Sobic003G037500 Sobic003G417350 Sobic003G417350 Sobic005G080200--Sobic003G417350 Sobic005G080200--Sobic010G075600 Sobic001G319200 Sobic001G319200 Sobic005G080200--Sobic001G319200 Sobic003G296300 Sobic003G296300 Sobic006G246100--Sobic003G296300 Sobic006G246100--Sobic005G080200 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic001G345400 Sobic001G345400 Sobic006G246100--Sobic001G345400 Sobic004G114400 Sobic004G114400 Sobic006G246100--Sobic004G114400 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic006G246100--Sobic004G195000
Octagon: transcription factors


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