Gene annotation
Transcriptome id Sobic.001G453100.1,Sobic.001G453100.2
Synonym ATHMT-1, HMT-1, Sb01g042580
Functional annotation homocysteine S-methyltransferase protein, putative, expressed
UniProt A0A1Z5SB40 , C5WSP6
Pfam PF02574
Panther DB PTHR21091 PTHR21091:SF6
NCBI CDD KOG1579; Homocysteine S-methyltransferase
KEGG Orthology K00547; mmuM, homocysteine S-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25900 : Homocysteine S-methyltransferase family protein
RAP-DB (Rice) LOC_Os03g12110.1 : homocysteine S-methyltransferase protein, putative, expressed
MaizeGDB (Corn) Zm00025a053040
Brachypodium PNT77855 , KQK22843
Barley HORVU4Hr1G067280.8 , HORVU4Hr1G067280.6 , HORVU4Hr1G067280.5 , HORVU4Hr1G067280.2 , HORVU4Hr1G067280.13 , HORVU4Hr1G067280.12 , HORVU4Hr1G067280.11
Wheat TraesCS4D02G242100 , TraesCS4B02G242700 , TraesCS4A02G065100
Populus -


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cDNA sequences
Sobic.001G453100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G111800 VQ domain containing protein, putative, expressed -
2 Sobic.007G135201 - -
3 Sobic.002G018500 - -
4 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
6 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.007G066932 - -
8 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
9 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.003G426300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
12 Sobic.005G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G067350 - -
14 Sobic.001G348700 - -
15 Sobic.003G362100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
16 Sobic.003G252800 hypothetical protein -
17 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G430600 OsCML19 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
20 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic001G453100 Sobic001G453100 Sobic004G111800 Sobic004G111800 Sobic001G453100--Sobic004G111800 Sobic007G135201 Sobic007G135201 Sobic001G453100--Sobic007G135201 Sobic002G018500 Sobic002G018500 Sobic001G453100--Sobic002G018500 Sobic010G117900 Sobic010G117900 Sobic001G453100--Sobic010G117900 Sobic004G304300 Sobic004G304300 Sobic001G453100--Sobic004G304300 Sobic003G426100 Sobic003G426100 Sobic001G453100--Sobic003G426100 Sobic007G066932 Sobic007G066932 Sobic001G453100--Sobic007G066932 Sobic007G067600 Sobic007G067600 Sobic001G453100--Sobic007G067600 Sobic002G195400 Sobic002G195400 Sobic001G453100--Sobic002G195400 Sobic001G444400 Sobic001G444400 Sobic004G111800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic004G111800--Sobic010G084400 Sobic006G153100 Sobic006G153100 Sobic004G111800--Sobic006G153100 Sobic009G106800 Sobic009G106800 Sobic004G111800--Sobic009G106800 Sobic003G252800 Sobic003G252800 Sobic004G111800--Sobic003G252800 Sobic005G101800 Sobic005G101800 Sobic004G111800--Sobic005G101800 Sobic005G206601 Sobic005G206601 Sobic004G111800--Sobic005G206601 Sobic001G348700 Sobic001G348700 Sobic004G111800--Sobic001G348700 Sobic001G339700 Sobic001G339700 Sobic004G111800--Sobic001G339700 Sobic007G135201--Sobic003G426100 Sobic001G231600 Sobic001G231600 Sobic007G135201--Sobic001G231600 Sobic007G135201--Sobic007G066932 Sobic007G135201--Sobic007G067600 Sobic007G135201--Sobic002G195400 Sobic007G067350 Sobic007G067350 Sobic007G135201--Sobic007G067350 Sobic010G102300 Sobic010G102300 Sobic007G135201--Sobic010G102300 Sobic010G035700 Sobic010G035700 Sobic007G135201--Sobic010G035700 Sobic006G084600 Sobic006G084600 Sobic007G135201--Sobic006G084600 Sobic002G018500--Sobic007G135201 Sobic004G128400 Sobic004G128400 Sobic002G018500--Sobic004G128400 Sobic002G018500--Sobic001G453100 Sobic006G038800 Sobic006G038800 Sobic002G018500--Sobic006G038800 Sobic002G182500 Sobic002G182500 Sobic002G018500--Sobic002G182500 Sobic002G018500--Sobic007G067600 Sobic002G018500--Sobic003G426100 Sobic002G018500--Sobic004G111800 Sobic002G018500--Sobic007G066932 Sobic010G117900--Sobic005G101800 Sobic010G117900--Sobic003G252800 Sobic010G084700 Sobic010G084700 Sobic010G117900--Sobic010G084700 Sobic007G227300 Sobic007G227300 Sobic010G117900--Sobic007G227300 Sobic004G221500 Sobic004G221500 Sobic010G117900--Sobic004G221500 Sobic010G117900--Sobic010G084400 Sobic010G117900--Sobic007G067600 Sobic010G117900--Sobic002G195400 Sobic010G117900--Sobic001G348700 Sobic004G304300--Sobic007G066932 Sobic004G304300--Sobic003G426100 Sobic004G304300--Sobic002G195400 Sobic003G426000 Sobic003G426000 Sobic004G304300--Sobic003G426000 Sobic004G304300--Sobic010G102300 Sobic004G304300--Sobic007G067350 Sobic001G319700 Sobic001G319700 Sobic004G304300--Sobic001G319700 Sobic004G304300--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic004G304300--Sobic009G128700 Sobic003G426100--Sobic007G066932 Sobic003G426100--Sobic002G195400 Sobic003G426100--Sobic010G035700 Sobic003G426100--Sobic010G102300 Sobic003G426100--Sobic007G067350 Sobic003G426100--Sobic004G304300 Sobic003G426100--Sobic001G319700 Sobic003G426100--Sobic007G135201 Sobic003G426100--Sobic007G067600 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic007G066932--Sobic006G084600 Sobic007G066932--Sobic007G135201 Sobic007G067600--Sobic002G195400 Sobic007G067600--Sobic007G066932 Sobic007G067600--Sobic001G319700 Sobic007G067600--Sobic010G102300 Sobic007G067600--Sobic005G101800 Sobic007G067600--Sobic010G117900 Sobic003G430600 Sobic003G430600 Sobic007G067600--Sobic003G430600 Sobic007G067600--Sobic003G426000 Sobic001G495164 Sobic001G495164 Sobic007G067600--Sobic001G495164 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic002G195400--Sobic003G426100 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic002G195400--Sobic004G304300
Octagon: transcription factors


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