Gene annotation
Transcriptome id Sobic.001G508300.1
Synonym Sb01g047440
Functional annotation cell division control protein 48 homolog E, putative, expressed
UniProt A0A1B6QQK9
Pfam PF02933 PF07724 PF05496 PF02359
Panther DB PTHR23077 PTHR23077:SF83
NCBI CDD -
KEGG Orthology K13525; VCP, transitional endoplasmic reticulum ATPase
Gene Ontology GO:0005524; ATP binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT5G03340 : ATPase, AAA-type, CDC48 protein
RAP-DB (Rice) LOC_Os10g30580.1 : cell division control protein 48 homolog E, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23711
Barley HORVU3Hr1G029450.3 , HORVU3Hr1G029450.2 , HORVU3Hr1G029450.1 , HORVU0Hr1G006340.1 , HORVU4Hr1G072010.4 , HORVU4Hr1G072010.7 , HORVU4Hr1G072010.2 , HORVU4Hr1G072010.3 , HORVU4Hr1G072010.1 , HORVU2Hr1G011690.5 , HORVU2Hr1G011690.4 , HORVU2Hr1G011690.3 , HORVU2Hr1G011690.2 , HORVU2Hr1G011690.1 , HORVU3Hr1G029440.1
Wheat TraesCS4D02G267800 , TraesCS2A02G060000 , TraesCS3A02G145000 , TraesCS3B02G171300 , TraesCS6D02G360700 , TraesCS1D02G340100 , TraesCS4B02G268400 , TraesCS1A02G222100 , TraesCS4D02G267600 , TraesCS4D02G267600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G041600 homeobox associated leucine zipper, putative, expressed -
2 Sobic.003G307100 serpin domain containing protein, putative, expressed K13963: serpin B
3 Sobic.005G227900 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
4 Sobic.001G287700 plant-specific domain TIGR01570 family protein, expressed -
5 Sobic.001G297200 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
6 Sobic.003G015700 endoglucanase precursor, putative, expressed -
7 Sobic.002G132500 - -
8 Sobic.004G251600 leaf senescence related protein, putative, expressed -
9 Sobic.008G040600 bZIP transcription factor domain containing protein, expressed -
10 Sobic.010G252550 - -
11 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.002G423700 - -
13 Sobic.009G081700 C4-dicarboxylate transporter/malic acid transport protein, expressed -
14 Sobic.001G114100 methyltransferase domain containing protein, expressed -
15 Sobic.001G452200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.004G185200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@homeobox associated leucine zipper, putative, expressed -
17 Sobic.010G028900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
18 Sobic.007G058600 O-methyltransferase, putative, expressed K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
19 Sobic.010G129000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
20 Sobic.003G386350 - -


Gene co-expression network
sample Sobic001G508300 Sobic001G508300 Sobic004G041600 Sobic004G041600 Sobic001G508300--Sobic004G041600 Sobic003G307100 Sobic003G307100 Sobic001G508300--Sobic003G307100 Sobic005G227900 Sobic005G227900 Sobic001G508300--Sobic005G227900 Sobic001G287700 Sobic001G287700 Sobic001G508300--Sobic001G287700 Sobic001G297200 Sobic001G297200 Sobic001G508300--Sobic001G297200 Sobic003G015700 Sobic003G015700 Sobic001G508300--Sobic003G015700 Sobic002G132500 Sobic002G132500 Sobic001G508300--Sobic002G132500 Sobic004G251600 Sobic004G251600 Sobic001G508300--Sobic004G251600 Sobic008G040600 Sobic008G040600 Sobic001G508300--Sobic008G040600 Sobic004G041600--Sobic005G227900 Sobic004G041600--Sobic003G015700 Sobic010G170150 Sobic010G170150 Sobic004G041600--Sobic010G170150 Sobic007G151700 Sobic007G151700 Sobic004G041600--Sobic007G151700 SobicK044402 SobicK044402 Sobic004G041600--SobicK044402 Sobic002G373700 Sobic002G373700 Sobic004G041600--Sobic002G373700 Sobic003G363600 Sobic003G363600 Sobic004G041600--Sobic003G363600 Sobic008G014601 Sobic008G014601 Sobic004G041600--Sobic008G014601 Sobic007G115600 Sobic007G115600 Sobic004G041600--Sobic007G115600 Sobic004G232300 Sobic004G232300 Sobic003G307100--Sobic004G232300 Sobic001G452200 Sobic001G452200 Sobic003G307100--Sobic001G452200 Sobic001G508400 Sobic001G508400 Sobic003G307100--Sobic001G508400 Sobic009G158500 Sobic009G158500 Sobic003G307100--Sobic009G158500 Sobic002G416500 Sobic002G416500 Sobic003G307100--Sobic002G416500 Sobic006G181900 Sobic006G181900 Sobic003G307100--Sobic006G181900 Sobic001G409400 Sobic001G409400 Sobic003G307100--Sobic001G409400 Sobic004G101400 Sobic004G101400 Sobic003G307100--Sobic004G101400 Sobic002G389100 Sobic002G389100 Sobic003G307100--Sobic002G389100 Sobic005G227900--Sobic004G041600 Sobic005G227900--SobicK044402 Sobic005G227900--Sobic003G015700 Sobic005G227900--Sobic008G014601 Sobic007G055400 Sobic007G055400 Sobic005G227900--Sobic007G055400 Sobic005G227900--Sobic007G115600 Sobic001G423900 Sobic001G423900 Sobic005G227900--Sobic001G423900 Sobic007G176300 Sobic007G176300 Sobic005G227900--Sobic007G176300 Sobic002G342901 Sobic002G342901 Sobic005G227900--Sobic002G342901 Sobic003G078000 Sobic003G078000 Sobic001G287700--Sobic003G078000 Sobic009G170900 Sobic009G170900 Sobic001G287700--Sobic009G170900 Sobic003G406060 Sobic003G406060 Sobic001G287700--Sobic003G406060 Sobic007G136000 Sobic007G136000 Sobic001G287700--Sobic007G136000 Sobic005G198600 Sobic005G198600 Sobic001G287700--Sobic005G198600 Sobic006G189600 Sobic006G189600 Sobic001G287700--Sobic006G189600 Sobic003G270900 Sobic003G270900 Sobic001G287700--Sobic003G270900 Sobic010G028900 Sobic010G028900 Sobic001G287700--Sobic010G028900 Sobic002G106700 Sobic002G106700 Sobic001G287700--Sobic002G106700 Sobic009G027700 Sobic009G027700 Sobic001G297200--Sobic009G027700 Sobic010G242700 Sobic010G242700 Sobic001G297200--Sobic010G242700 Sobic001G297200--Sobic008G040600 Sobic001G230801 Sobic001G230801 Sobic001G297200--Sobic001G230801 Sobic009G157800 Sobic009G157800 Sobic001G297200--Sobic009G157800 Sobic008G122800 Sobic008G122800 Sobic001G297200--Sobic008G122800 Sobic004G180100 Sobic004G180100 Sobic001G297200--Sobic004G180100 Sobic001G342101 Sobic001G342101 Sobic001G297200--Sobic001G342101 Sobic001G505600 Sobic001G505600 Sobic001G297200--Sobic001G505600 Sobic003G015700--Sobic005G227900 Sobic003G015700--Sobic004G041600 Sobic004G341600 Sobic004G341600 Sobic003G015700--Sobic004G341600 Sobic002G321200 Sobic002G321200 Sobic003G015700--Sobic002G321200 Sobic009G215700 Sobic009G215700 Sobic003G015700--Sobic009G215700 Sobic009G251700 Sobic009G251700 Sobic003G015700--Sobic009G251700 Sobic004G202900 Sobic004G202900 Sobic003G015700--Sobic004G202900 Sobic003G015700--SobicK044402 Sobic003G015700--Sobic003G363600 Sobic003G278200 Sobic003G278200 Sobic002G132500--Sobic003G278200 Sobic006G104000 Sobic006G104000 Sobic002G132500--Sobic006G104000 Sobic003G011400 Sobic003G011400 Sobic002G132500--Sobic003G011400 Sobic003G024600 Sobic003G024600 Sobic002G132500--Sobic003G024600 Sobic001G466450 Sobic001G466450 Sobic002G132500--Sobic001G466450 Sobic010G250300 Sobic010G250300 Sobic004G251600--Sobic010G250300 Sobic004G232700 Sobic004G232700 Sobic004G251600--Sobic004G232700 Sobic007G212100 Sobic007G212100 Sobic004G251600--Sobic007G212100 Sobic003G087700 Sobic003G087700 Sobic004G251600--Sobic003G087700 Sobic001G102100 Sobic001G102100 Sobic004G251600--Sobic001G102100 Sobic007G127400 Sobic007G127400 Sobic004G251600--Sobic007G127400 Sobic009G176400 Sobic009G176400 Sobic004G251600--Sobic009G176400 Sobic004G275800 Sobic004G275800 Sobic004G251600--Sobic004G275800 Sobic007G127500 Sobic007G127500 Sobic004G251600--Sobic007G127500 Sobic008G040600--Sobic009G027700 Sobic003G065100 Sobic003G065100 Sobic008G040600--Sobic003G065100 Sobic001G234500 Sobic001G234500 Sobic008G040600--Sobic001G234500 Sobic006G064450 Sobic006G064450 Sobic008G040600--Sobic006G064450 Sobic002G087600 Sobic002G087600 Sobic008G040600--Sobic002G087600 Sobic008G040600--Sobic008G122800 Sobic005G052400 Sobic005G052400 Sobic008G040600--Sobic005G052400 Sobic005G144500 Sobic005G144500 Sobic008G040600--Sobic005G144500 Sobic001G345500 Sobic001G345500 Sobic008G040600--Sobic001G345500
Octagon: transcription factors


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