Gene annotation
Transcriptome id Sobic.002G024400.1
Synonym SCPL27, Sb02g002260
Functional annotation OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1W0W1X3
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF71
NCBI CDD -
KEGG Orthology K16297; serine carboxypeptidase-like clade II
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT3G07990 : serine carboxypeptidase-like 27
RAP-DB (Rice) LOC_Os05g18604.1 : OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a043228 , Zm00025a035659
Brachypodium KQK07419 , KQK17647
Barley HORVU1Hr1G018710.2 , HORVU1Hr1G018710.3 , HORVU1Hr1G018710.1 , HORVU1Hr1G018710.4
Wheat TraesCS1D02G087700 , TraesCS1D02G087700 , TraesCS1D02G087600 , TraesCS3A02G310100 , TraesCS1A02G086100 , TraesCS1A02G086100
Populus -


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cDNA sequences
Sobic.002G024400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145700 thaumatin, putative, expressed -
2 Sobic.010G230900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.003G031100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.005G126200 Leucine-rich repeat protein 1(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.005G169200 WIP3 - Wound-induced protein precursor, expressed -
6 Sobic.010G230800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
7 Sobic.006G076800 serine/threonine-protein kinase receptor precursor, putative, expressed -
8 Sobic.008G009200 SAG20, putative, expressed -
9 Sobic.005G131700 - -
10 Sobic.001G469500 transporter family protein, putative, expressed -
11 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
12 Sobic.007G074400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
13 Sobic.006G226800 enzyme relate to 3-deoxyanthocyanidine pathway P/tan gene(PubMedID : 26994288)@leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
14 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
15 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.008G182600 thaumatin, putative, expressed -
18 Sobic.007G058900 "SbCHS8, now retermed SbSTS1, encodes an enzyme with stilbene synthase activity, suggesting that sorghum accumulates stilbene-derived defense metabolites in addition to the well-characterized 3-deoxyanthocyanidin phytoalexins."(PubMedID : 15821144)@Metabolize resveratrol into its glycosides in the transgenicArabidopsis plants.(PubMedID : 18023075)@"an enzyme with stilbene synthase activity, a key role in the expression of resistance against C. sublineolum"(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
19 Sobic.008G009100 SAG20, putative, expressed -
20 Sobic.009G073500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic002G024400 Sobic002G024400 Sobic001G145700 Sobic001G145700 Sobic002G024400--Sobic001G145700 Sobic010G230900 Sobic010G230900 Sobic002G024400--Sobic010G230900 Sobic003G031100 Sobic003G031100 Sobic002G024400--Sobic003G031100 Sobic005G126200 Sobic005G126200 Sobic002G024400--Sobic005G126200 Sobic005G169200 Sobic005G169200 Sobic002G024400--Sobic005G169200 Sobic010G230800 Sobic010G230800 Sobic002G024400--Sobic010G230800 Sobic006G076800 Sobic006G076800 Sobic002G024400--Sobic006G076800 Sobic008G009200 Sobic008G009200 Sobic002G024400--Sobic008G009200 Sobic005G131700 Sobic005G131700 Sobic002G024400--Sobic005G131700 Sobic001G145700--Sobic005G169200 Sobic008G182300 Sobic008G182300 Sobic001G145700--Sobic008G182300 Sobic008G182600 Sobic008G182600 Sobic001G145700--Sobic008G182600 Sobic009G181200 Sobic009G181200 Sobic001G145700--Sobic009G181200 Sobic008G182800 Sobic008G182800 Sobic001G145700--Sobic008G182800 Sobic001G145600 Sobic001G145600 Sobic001G145700--Sobic001G145600 Sobic001G145700--Sobic010G230800 Sobic009G073500 Sobic009G073500 Sobic001G145700--Sobic009G073500 Sobic001G145700--Sobic006G076800 Sobic010G230900--Sobic010G230800 Sobic002G065700 Sobic002G065700 Sobic010G230900--Sobic002G065700 Sobic010G231000 Sobic010G231000 Sobic010G230900--Sobic010G231000 Sobic010G230900--Sobic005G169200 Sobic010G230900--Sobic001G145700 Sobic010G230900--Sobic008G182800 Sobic010G230900--Sobic009G181200 Sobic010G230900--Sobic002G024400 Sobic010G230900--Sobic009G073500 Sobic001G018400 Sobic001G018400 Sobic003G031100--Sobic001G018400 Sobic003G031100--Sobic005G126200 Sobic005G171100 Sobic005G171100 Sobic003G031100--Sobic005G171100 Sobic007G074400 Sobic007G074400 Sobic003G031100--Sobic007G074400 Sobic003G031100--Sobic002G024400 Sobic003G031100--Sobic009G073500 Sobic007G058900 Sobic007G058900 Sobic003G031100--Sobic007G058900 Sobic003G031100--Sobic005G131700 Sobic008G146700 Sobic008G146700 Sobic003G031100--Sobic008G146700 Sobic005G126200--Sobic005G131700 Sobic005G126200--Sobic008G182600 Sobic005G126200--Sobic009G073500 Sobic005G126200--Sobic008G182800 Sobic006G226800 Sobic006G226800 Sobic005G126200--Sobic006G226800 Sobic005G126200--Sobic003G031100 Sobic005G126200--Sobic001G145700 Sobic006G117400 Sobic006G117400 Sobic005G126200--Sobic006G117400 Sobic005G126200--Sobic009G181200 Sobic005G169200--Sobic008G182800 Sobic005G169200--Sobic008G182600 Sobic005G169200--Sobic001G145700 Sobic005G169200--Sobic010G230800 Sobic005G169200--Sobic008G182300 Sobic005G169200--Sobic009G073500 Sobic005G169200--Sobic010G230900 Sobic005G169200--Sobic010G231000 Sobic008G182400 Sobic008G182400 Sobic005G169200--Sobic008G182400 Sobic010G230800--Sobic010G230900 Sobic010G230800--Sobic010G231000 Sobic010G230800--Sobic002G065700 Sobic010G230800--Sobic005G169200 Sobic010G230800--Sobic008G182800 Sobic010G230800--Sobic001G145700 Sobic010G230800--Sobic009G073500 Sobic010G230800--Sobic009G181200 Sobic002G065600 Sobic002G065600 Sobic010G230800--Sobic002G065600 Sobic006G076800--Sobic001G145700 Sobic002G046800 Sobic002G046800 Sobic006G076800--Sobic002G046800 Sobic005G133200 Sobic005G133200 Sobic006G076800--Sobic005G133200 Sobic002G032700 Sobic002G032700 Sobic006G076800--Sobic002G032700 Sobic007G120401 Sobic007G120401 Sobic006G076800--Sobic007G120401 Sobic002G140700 Sobic002G140700 Sobic006G076800--Sobic002G140700 Sobic003G010300 Sobic003G010300 Sobic006G076800--Sobic003G010300 Sobic006G003400 Sobic006G003400 Sobic006G076800--Sobic006G003400 Sobic008G079300 Sobic008G079300 Sobic006G076800--Sobic008G079300 Sobic008G009100 Sobic008G009100 Sobic008G009200--Sobic008G009100 Sobic001G469500 Sobic001G469500 Sobic008G009200--Sobic001G469500 Sobic010G044700 Sobic010G044700 Sobic008G009200--Sobic010G044700 Sobic005G171500 Sobic005G171500 Sobic008G009200--Sobic005G171500 Sobic001G354400 Sobic001G354400 Sobic008G009200--Sobic001G354400 Sobic005G217200 Sobic005G217200 Sobic008G009200--Sobic005G217200 Sobic003G244600 Sobic003G244600 Sobic008G009200--Sobic003G244600 Sobic002G035200 Sobic002G035200 Sobic008G009200--Sobic002G035200 Sobic002G122800 Sobic002G122800 Sobic008G009200--Sobic002G122800 Sobic005G131700--Sobic005G126200 Sobic005G037100 Sobic005G037100 Sobic005G131700--Sobic005G037100 Sobic005G136300 Sobic005G136300 Sobic005G131700--Sobic005G136300 Sobic002G000400 Sobic002G000400 Sobic005G131700--Sobic002G000400 Sobic005G131700--Sobic003G031100 Sobic006G132500 Sobic006G132500 Sobic005G131700--Sobic006G132500 Sobic005G131700--Sobic008G182600 Sobic005G131700--Sobic006G226800 Sobic001G401300 Sobic001G401300 Sobic005G131700--Sobic001G401300
Octagon: transcription factors


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