Gene annotation
Transcriptome id Sobic.003G031100.2,Sobic.003G031100.1
Synonym Sb03g002910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q116 , A0A1W0VVI0
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF180
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56960 : basic helix-loop-helix (bHLH) DNA-binding family protein
RAP-DB (Rice) LOC_Os01g09990.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035830 , Zm00025a023008
Brachypodium KQK03161
Barley -
Wheat TraesCS3B02G122800 , TraesCS3B02G122900 , TraesCS3D02G106600 , TraesCS3D02G106600 , TraesCS3A02G104400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.005G126200 Leucine-rich repeat protein 1(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.005G171100 - -
4 Sobic.007G074400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
5 Sobic.002G024400 OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
6 Sobic.009G073500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.007G058900 "SbCHS8, now retermed SbSTS1, encodes an enzyme with stilbene synthase activity, suggesting that sorghum accumulates stilbene-derived defense metabolites in addition to the well-characterized 3-deoxyanthocyanidin phytoalexins."(PubMedID : 15821144)@Metabolize resveratrol into its glycosides in the transgenicArabidopsis plants.(PubMedID : 18023075)@"an enzyme with stilbene synthase activity, a key role in the expression of resistance against C. sublineolum"(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
8 Sobic.005G131700 - -
9 Sobic.008G146700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
10 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.010G097900 expressed protein -
12 Sobic.004G052500 - -
13 Sobic.001G145700 thaumatin, putative, expressed -
14 Sobic.008G183300 thaumatin, putative, expressed -
15 Sobic.010G155300 VQ domain containing protein, putative, expressed -
16 Sobic.006G226800 enzyme relate to 3-deoxyanthocyanidine pathway P/tan gene(PubMedID : 26994288)@leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
17 Sobic.001G291600 - -
18 Sobic.001G146200 OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.010G240400 beta-expansin precursor, putative, expressed -
20 Sobic.006G231600 acetyltransferase, GNAT family, putative, expressed -


Gene co-expression network
sample Sobic003G031100 Sobic003G031100 Sobic001G018400 Sobic001G018400 Sobic003G031100--Sobic001G018400 Sobic005G126200 Sobic005G126200 Sobic003G031100--Sobic005G126200 Sobic005G171100 Sobic005G171100 Sobic003G031100--Sobic005G171100 Sobic007G074400 Sobic007G074400 Sobic003G031100--Sobic007G074400 Sobic002G024400 Sobic002G024400 Sobic003G031100--Sobic002G024400 Sobic009G073500 Sobic009G073500 Sobic003G031100--Sobic009G073500 Sobic007G058900 Sobic007G058900 Sobic003G031100--Sobic007G058900 Sobic005G131700 Sobic005G131700 Sobic003G031100--Sobic005G131700 Sobic008G146700 Sobic008G146700 Sobic003G031100--Sobic008G146700 Sobic004G052500 Sobic004G052500 Sobic001G018400--Sobic004G052500 Sobic008G183300 Sobic008G183300 Sobic001G018400--Sobic008G183300 Sobic001G146500 Sobic001G146500 Sobic001G018400--Sobic001G146500 Sobic003G291700 Sobic003G291700 Sobic001G018400--Sobic003G291700 Sobic001G018400--Sobic003G031100 Sobic001G018400--Sobic005G171100 Sobic005G082700 Sobic005G082700 Sobic001G018400--Sobic005G082700 Sobic006G113900 Sobic006G113900 Sobic001G018400--Sobic006G113900 Sobic010G273600 Sobic010G273600 Sobic001G018400--Sobic010G273600 Sobic005G126200--Sobic005G131700 Sobic008G182600 Sobic008G182600 Sobic005G126200--Sobic008G182600 Sobic005G126200--Sobic009G073500 Sobic008G182800 Sobic008G182800 Sobic005G126200--Sobic008G182800 Sobic006G226800 Sobic006G226800 Sobic005G126200--Sobic006G226800 Sobic005G126200--Sobic003G031100 Sobic001G145700 Sobic001G145700 Sobic005G126200--Sobic001G145700 Sobic006G117400 Sobic006G117400 Sobic005G126200--Sobic006G117400 Sobic009G181200 Sobic009G181200 Sobic005G126200--Sobic009G181200 Sobic005G171100--Sobic008G146700 Sobic010G045000 Sobic010G045000 Sobic005G171100--Sobic010G045000 Sobic005G171100--Sobic003G291700 Sobic006G246200 Sobic006G246200 Sobic005G171100--Sobic006G246200 Sobic006G231600 Sobic006G231600 Sobic005G171100--Sobic006G231600 Sobic002G209100 Sobic002G209100 Sobic005G171100--Sobic002G209100 Sobic005G171100--Sobic005G082700 Sobic005G171100--Sobic006G113900 Sobic001G136300 Sobic001G136300 Sobic005G171100--Sobic001G136300 Sobic007G074400--Sobic003G031100 Sobic005G217200 Sobic005G217200 Sobic007G074400--Sobic005G217200 Sobic001G319100 Sobic001G319100 Sobic007G074400--Sobic001G319100 Sobic004G237600 Sobic004G237600 Sobic007G074400--Sobic004G237600 Sobic006G174600 Sobic006G174600 Sobic007G074400--Sobic006G174600 Sobic008G142100 Sobic008G142100 Sobic007G074400--Sobic008G142100 Sobic001G318900 Sobic001G318900 Sobic007G074400--Sobic001G318900 Sobic003G321300 Sobic003G321300 Sobic007G074400--Sobic003G321300 Sobic005G229400 Sobic005G229400 Sobic007G074400--Sobic005G229400 Sobic002G024400--Sobic001G145700 Sobic010G230900 Sobic010G230900 Sobic002G024400--Sobic010G230900 Sobic002G024400--Sobic003G031100 Sobic002G024400--Sobic005G126200 Sobic005G169200 Sobic005G169200 Sobic002G024400--Sobic005G169200 Sobic010G230800 Sobic010G230800 Sobic002G024400--Sobic010G230800 Sobic006G076800 Sobic006G076800 Sobic002G024400--Sobic006G076800 Sobic008G009200 Sobic008G009200 Sobic002G024400--Sobic008G009200 Sobic002G024400--Sobic005G131700 Sobic009G073500--Sobic008G182800 Sobic010G240400 Sobic010G240400 Sobic009G073500--Sobic010G240400 Sobic001G291600 Sobic001G291600 Sobic009G073500--Sobic001G291600 Sobic009G073500--Sobic005G169200 Sobic001G099400 Sobic001G099400 Sobic009G073500--Sobic001G099400 Sobic010G231000 Sobic010G231000 Sobic009G073500--Sobic010G231000 Sobic002G065800 Sobic002G065800 Sobic009G073500--Sobic002G065800 Sobic008G182400 Sobic008G182400 Sobic009G073500--Sobic008G182400 Sobic005G084300 Sobic005G084300 Sobic009G073500--Sobic005G084300 Sobic007G059100 Sobic007G059100 Sobic007G058900--Sobic007G059100 Sobic007G215700 Sobic007G215700 Sobic007G058900--Sobic007G215700 Sobic007G058900--Sobic010G240400 Sobic007G058900--Sobic003G031100 Sobic002G023000 Sobic002G023000 Sobic007G058900--Sobic002G023000 Sobic007G058800 Sobic007G058800 Sobic007G058900--Sobic007G058800 Sobic007G058900--Sobic001G291600 Sobic007G058900--Sobic009G073500 Sobic007G058900--Sobic008G146700 Sobic005G131700--Sobic005G126200 Sobic005G037100 Sobic005G037100 Sobic005G131700--Sobic005G037100 Sobic005G136300 Sobic005G136300 Sobic005G131700--Sobic005G136300 Sobic002G000400 Sobic002G000400 Sobic005G131700--Sobic002G000400 Sobic005G131700--Sobic003G031100 Sobic006G132500 Sobic006G132500 Sobic005G131700--Sobic006G132500 Sobic005G131700--Sobic008G182600 Sobic005G131700--Sobic006G226800 Sobic001G401300 Sobic001G401300 Sobic005G131700--Sobic001G401300 Sobic008G146700--Sobic005G084300 Sobic004G258300 Sobic004G258300 Sobic008G146700--Sobic004G258300 Sobic008G146700--Sobic005G171100 Sobic002G327900 Sobic002G327900 Sobic008G146700--Sobic002G327900 Sobic008G182900 Sobic008G182900 Sobic008G146700--Sobic008G182900 Sobic008G146700--Sobic010G240400 Sobic002G327700 Sobic002G327700 Sobic008G146700--Sobic002G327700 Sobic002G327800 Sobic002G327800 Sobic008G146700--Sobic002G327800 Sobic008G146700--Sobic009G073500
Octagon: transcription factors


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