Gene annotation
Transcriptome id Sobic.002G032200.1
Synonym
Functional annotation -
UniProt A0A1B6Q909
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G032200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G078300 - -
2 Sobic.010G272600 expressed protein -
3 Sobic.003G384900 pectinacetylesterase domain containing protein, expressed -
4 Sobic.003G266700 expressed protein -
5 Sobic.009G159900 homeodomain protein, putative, expressed -
6 Sobic.008G044750 - -
7 Sobic.007G139650 - -
8 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
9 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
10 Sobic.004G283201 - -
11 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
12 Sobic.010G247500 homeobox associated leucine zipper, putative, expressed -
13 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
14 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
15 Sobic.001G509400 - -
16 Sobic.008G031300 nucleotidyltransferase, putative, expressed -
17 Sobic.004G204400 OsFBX309 - F-box domain containing protein, expressed -
18 Sobic.007G070500 OsFBL41 - F-box domain and LRR containing protein, expressed -
19 Sobic.003G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
20 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -


Gene co-expression network
sample Sobic002G032200 Sobic002G032200 Sobic006G078300 Sobic006G078300 Sobic002G032200--Sobic006G078300 Sobic010G272600 Sobic010G272600 Sobic002G032200--Sobic010G272600 Sobic003G384900 Sobic003G384900 Sobic002G032200--Sobic003G384900 Sobic003G266700 Sobic003G266700 Sobic002G032200--Sobic003G266700 Sobic009G159900 Sobic009G159900 Sobic002G032200--Sobic009G159900 Sobic008G044750 Sobic008G044750 Sobic002G032200--Sobic008G044750 Sobic007G139650 Sobic007G139650 Sobic002G032200--Sobic007G139650 Sobic010G016500 Sobic010G016500 Sobic002G032200--Sobic010G016500 Sobic006G055600 Sobic006G055600 Sobic002G032200--Sobic006G055600 Sobic006G078300--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic006G078300--Sobic004G244300 Sobic006G203000 Sobic006G203000 Sobic006G078300--Sobic006G203000 Sobic001G075101 Sobic001G075101 Sobic006G078300--Sobic001G075101 Sobic004G281200 Sobic004G281200 Sobic006G078300--Sobic004G281200 Sobic006G194600 Sobic006G194600 Sobic006G078300--Sobic006G194600 Sobic001G509400 Sobic001G509400 Sobic006G078300--Sobic001G509400 Sobic006G078350 Sobic006G078350 Sobic006G078300--Sobic006G078350 Sobic001G157400 Sobic001G157400 Sobic006G078300--Sobic001G157400 Sobic008G104100 Sobic008G104100 Sobic010G272600--Sobic008G104100 Sobic010G272600--Sobic007G139650 Sobic005G188200 Sobic005G188200 Sobic010G272600--Sobic005G188200 Sobic010G272600--Sobic002G032200 Sobic007G101900 Sobic007G101900 Sobic010G272600--Sobic007G101900 Sobic002G217100 Sobic002G217100 Sobic010G272600--Sobic002G217100 Sobic009G057400 Sobic009G057400 Sobic010G272600--Sobic009G057400 Sobic001G398500 Sobic001G398500 Sobic010G272600--Sobic001G398500 Sobic010G247500 Sobic010G247500 Sobic010G272600--Sobic010G247500 Sobic001G092600 Sobic001G092600 Sobic003G384900--Sobic001G092600 Sobic003G384900--Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic003G384900--Sobic004G283201 Sobic003G384900--Sobic010G016500 Sobic003G384900--Sobic001G398500 Sobic003G384900--Sobic006G078300 Sobic006G005600 Sobic006G005600 Sobic003G384900--Sobic006G005600 Sobic001G189700 Sobic001G189700 Sobic003G384900--Sobic001G189700 Sobic001G093200 Sobic001G093200 Sobic003G384900--Sobic001G093200 Sobic008G065400 Sobic008G065400 Sobic003G266700--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic003G266700--Sobic001G278600 Sobic004G121000 Sobic004G121000 Sobic003G266700--Sobic004G121000 Sobic003G311200 Sobic003G311200 Sobic003G266700--Sobic003G311200 Sobic003G366850 Sobic003G366850 Sobic003G266700--Sobic003G366850 Sobic003G429500 Sobic003G429500 Sobic003G266700--Sobic003G429500 Sobic008G045600 Sobic008G045600 Sobic003G266700--Sobic008G045600 Sobic010G101700 Sobic010G101700 Sobic003G266700--Sobic010G101700 Sobic004G317600 Sobic004G317600 Sobic003G266700--Sobic004G317600 Sobic006G032200 Sobic006G032200 Sobic009G159900--Sobic006G032200 Sobic003G144200 Sobic003G144200 Sobic009G159900--Sobic003G144200 Sobic009G170100 Sobic009G170100 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic009G159900--Sobic001G157400 Sobic003G342600 Sobic003G342600 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic004G273200 Sobic004G273200 Sobic009G159900--Sobic004G273200 Sobic002G023900 Sobic002G023900 Sobic009G159900--Sobic002G023900 Sobic008G044750--Sobic001G509400 Sobic009G128300 Sobic009G128300 Sobic008G044750--Sobic009G128300 Sobic003G079800 Sobic003G079800 Sobic008G044750--Sobic003G079800 Sobic002G182800 Sobic002G182800 Sobic008G044750--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic008G044750--Sobic003G233900 Sobic003G227600 Sobic003G227600 Sobic008G044750--Sobic003G227600 Sobic003G198150 Sobic003G198150 Sobic008G044750--Sobic003G198150 Sobic003G066900 Sobic003G066900 Sobic008G044750--Sobic003G066900 Sobic008G044750--Sobic001G075101 Sobic007G139650--Sobic010G272600 Sobic007G139650--Sobic010G247500 Sobic007G139650--Sobic010G016500 Sobic008G059000 Sobic008G059000 Sobic007G139650--Sobic008G059000 Sobic009G076500 Sobic009G076500 Sobic007G139650--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic007G139650--Sobic008G058900 Sobic009G167000 Sobic009G167000 Sobic007G139650--Sobic009G167000 Sobic007G139650--Sobic006G194600 Sobic007G139650--Sobic002G217100 Sobic010G016500--Sobic004G281200 Sobic010G016500--Sobic004G244300 Sobic010G016500--Sobic006G194600 Sobic010G016500--Sobic006G203000 Sobic004G283300 Sobic004G283300 Sobic010G016500--Sobic004G283300 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic001G081600 Sobic001G081600 Sobic010G016500--Sobic001G081600 Sobic010G016500--Sobic002G182800 Sobic006G055600--Sobic004G283201 Sobic006G055600--Sobic006G005600 Sobic006G055600--Sobic001G092600 Sobic003G373150 Sobic003G373150 Sobic006G055600--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic006G055600--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic006G055600--Sobic009G163900 Sobic004G321000 Sobic004G321000 Sobic006G055600--Sobic004G321000 Sobic004G278200 Sobic004G278200 Sobic006G055600--Sobic004G278200 Sobic009G201500 Sobic009G201500 Sobic006G055600--Sobic009G201500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.