Gene annotation
Transcriptome id Sobic.003G384900.1
Synonym Sb03g042400
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt A0A1B6Q7H1
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF19
NCBI CDD KOG4287; Pectin acetylesterase and similar proteins
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G09410 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os01g66830.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026474
Brachypodium -
Barley -
Wheat TraesCS7A02G040500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
2 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
3 Sobic.004G283201 - -
4 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
5 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
6 Sobic.006G078300 - -
7 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
8 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
9 Sobic.001G093200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.002G032200 - -
12 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
13 Sobic.003G181400 - -
14 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
15 Sobic.003G338900 expressed protein -
16 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
17 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
18 Sobic.009G167000 expressed protein -
19 Sobic.004G283300 AP2 domain containing protein, expressed -
20 Sobic.001G276900 ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic003G384900 Sobic003G384900 Sobic001G092600 Sobic001G092600 Sobic003G384900--Sobic001G092600 Sobic006G055600 Sobic006G055600 Sobic003G384900--Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic003G384900--Sobic004G283201 Sobic010G016500 Sobic010G016500 Sobic003G384900--Sobic010G016500 Sobic001G398500 Sobic001G398500 Sobic003G384900--Sobic001G398500 Sobic006G078300 Sobic006G078300 Sobic003G384900--Sobic006G078300 Sobic006G005600 Sobic006G005600 Sobic003G384900--Sobic006G005600 Sobic001G189700 Sobic001G189700 Sobic003G384900--Sobic001G189700 Sobic001G093200 Sobic001G093200 Sobic003G384900--Sobic001G093200 Sobic001G092600--Sobic006G005600 Sobic001G092600--Sobic006G055600 Sobic009G163900 Sobic009G163900 Sobic001G092600--Sobic009G163900 Sobic001G092600--Sobic004G283201 Sobic006G184800 Sobic006G184800 Sobic001G092600--Sobic006G184800 Sobic009G231400 Sobic009G231400 Sobic001G092600--Sobic009G231400 Sobic009G201500 Sobic009G201500 Sobic001G092600--Sobic009G201500 Sobic003G373150 Sobic003G373150 Sobic001G092600--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic001G092600--Sobic004G321000 Sobic006G055600--Sobic004G283201 Sobic006G055600--Sobic006G005600 Sobic006G055600--Sobic001G092600 Sobic006G055600--Sobic003G373150 Sobic006G055600--Sobic006G184800 Sobic006G055600--Sobic009G163900 Sobic006G055600--Sobic004G321000 Sobic004G278200 Sobic004G278200 Sobic006G055600--Sobic004G278200 Sobic006G055600--Sobic009G201500 Sobic004G283201--Sobic006G055600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic004G283201--Sobic006G184800 Sobic004G283201--Sobic001G092600 Sobic004G283300 Sobic004G283300 Sobic004G283201--Sobic004G283300 Sobic004G283201--Sobic010G016500 Sobic001G125100 Sobic001G125100 Sobic004G283201--Sobic001G125100 Sobic004G283201--Sobic009G201500 Sobic004G281200 Sobic004G281200 Sobic010G016500--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic010G016500--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic010G016500--Sobic006G194600 Sobic006G203000 Sobic006G203000 Sobic010G016500--Sobic006G203000 Sobic010G016500--Sobic004G283300 Sobic002G217100 Sobic002G217100 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic001G081600 Sobic001G081600 Sobic010G016500--Sobic001G081600 Sobic002G182800 Sobic002G182800 Sobic010G016500--Sobic002G182800 Sobic009G071800 Sobic009G071800 Sobic001G398500--Sobic009G071800 Sobic001G398500--Sobic002G217100 Sobic006G184400 Sobic006G184400 Sobic001G398500--Sobic006G184400 Sobic003G150400 Sobic003G150400 Sobic001G398500--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic001G398500--Sobic009G184400 Sobic001G476400 Sobic001G476400 Sobic001G398500--Sobic001G476400 Sobic001G209800 Sobic001G209800 Sobic001G398500--Sobic001G209800 Sobic001G077700 Sobic001G077700 Sobic001G398500--Sobic001G077700 Sobic010G076700 Sobic010G076700 Sobic001G398500--Sobic010G076700 Sobic006G078300--Sobic010G016500 Sobic006G078300--Sobic004G244300 Sobic006G078300--Sobic006G203000 Sobic001G075101 Sobic001G075101 Sobic006G078300--Sobic001G075101 Sobic006G078300--Sobic004G281200 Sobic006G078300--Sobic006G194600 Sobic001G509400 Sobic001G509400 Sobic006G078300--Sobic001G509400 Sobic006G078350 Sobic006G078350 Sobic006G078300--Sobic006G078350 Sobic001G157400 Sobic001G157400 Sobic006G078300--Sobic001G157400 Sobic006G005600--Sobic006G055600 Sobic006G005600--Sobic001G092600 Sobic006G005600--Sobic004G283201 Sobic006G005600--Sobic009G201500 Sobic006G005600--Sobic009G163900 Sobic006G005600--Sobic006G184800 Sobic006G005600--Sobic003G373150 Sobic006G005600--Sobic004G283300 Sobic006G005600--Sobic004G278200 Sobic004G053200 Sobic004G053200 Sobic001G189700--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G189700--Sobic003G338900 Sobic002G080000 Sobic002G080000 Sobic001G189700--Sobic002G080000 Sobic004G280800 Sobic004G280800 Sobic001G189700--Sobic004G280800 Sobic001G290400 Sobic001G290400 Sobic001G189700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G189700--Sobic001G403600 Sobic003G012800 Sobic003G012800 Sobic001G189700--Sobic003G012800 Sobic009G044400 Sobic009G044400 Sobic001G189700--Sobic009G044400 Sobic005G139700 Sobic005G139700 Sobic001G189700--Sobic005G139700 Sobic001G093200--Sobic009G231400 Sobic004G249900 Sobic004G249900 Sobic001G093200--Sobic004G249900 Sobic001G420100 Sobic001G420100 Sobic001G093200--Sobic001G420100 Sobic005G122500 Sobic005G122500 Sobic001G093200--Sobic005G122500 Sobic001G093200--Sobic009G163900 Sobic004G228900 Sobic004G228900 Sobic001G093200--Sobic004G228900 Sobic004G245850 Sobic004G245850 Sobic001G093200--Sobic004G245850 Sobic001G093200--Sobic001G092600 Sobic001G093200--Sobic006G184800
Octagon: transcription factors


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