Gene annotation
Transcriptome id Sobic.002G080200.1
Synonym Sb02g006690, HERK2
Functional annotation receptor protein kinase, putative, expressed
UniProt C5XDF0
Pfam PF00069
Panther DB PTHR27003 PTHR27003:SF66
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G30570 : hercules receptor kinase 2
RAP-DB (Rice) LOC_Os07g12480.1 : receptor protein kinase, putative, expressed
MaizeGDB (Corn) Zm00025a025430
Brachypodium KQJ88913
Barley HORVU1Hr1G083220.10 , HORVU1Hr1G083220.11 , HORVU1Hr1G083220.12 , HORVU1Hr1G083220.3 , HORVU1Hr1G083220.6 , HORVU1Hr1G083220.4 , HORVU1Hr1G083220.9
Wheat TraesCSU02G047400 , TraesCS3D02G048000 , TraesCSU02G047400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.004G003100 nodulin, putative, expressed -
3 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
5 Sobic.002G028632 - -
6 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
7 Sobic.001G246700 O-methyltransferase, putative, expressed -
8 Sobic.002G025500 expressed protein -
9 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
10 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
11 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
12 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
13 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
15 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.005G206000 dirigent, putative, expressed -
17 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
18 Sobic.009G233100 AP2 domain containing protein, expressed -
19 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
20 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase


Gene co-expression network
sample Sobic002G080200 Sobic002G080200 Sobic002G366200 Sobic002G366200 Sobic002G080200--Sobic002G366200 Sobic004G003100 Sobic004G003100 Sobic002G080200--Sobic004G003100 Sobic003G280000 Sobic003G280000 Sobic002G080200--Sobic003G280000 Sobic001G232200 Sobic001G232200 Sobic002G080200--Sobic001G232200 Sobic002G028632 Sobic002G028632 Sobic002G080200--Sobic002G028632 Sobic001G218400 Sobic001G218400 Sobic002G080200--Sobic001G218400 Sobic001G246700 Sobic001G246700 Sobic002G080200--Sobic001G246700 Sobic002G025500 Sobic002G025500 Sobic002G080200--Sobic002G025500 Sobic005G166700 Sobic005G166700 Sobic002G080200--Sobic005G166700 Sobic002G366200--Sobic002G028632 Sobic003G357700 Sobic003G357700 Sobic002G366200--Sobic003G357700 Sobic007G177400 Sobic007G177400 Sobic002G366200--Sobic007G177400 Sobic003G443700 Sobic003G443700 Sobic002G366200--Sobic003G443700 Sobic002G366200--Sobic002G025500 Sobic007G064500 Sobic007G064500 Sobic002G366200--Sobic007G064500 Sobic008G010500 Sobic008G010500 Sobic002G366200--Sobic008G010500 Sobic005G216400 Sobic005G216400 Sobic002G366200--Sobic005G216400 Sobic005G119900 Sobic005G119900 Sobic002G366200--Sobic005G119900 Sobic005G110514 Sobic005G110514 Sobic004G003100--Sobic005G110514 Sobic009G233100 Sobic009G233100 Sobic004G003100--Sobic009G233100 Sobic003G007400 Sobic003G007400 Sobic004G003100--Sobic003G007400 Sobic010G013000 Sobic010G013000 Sobic004G003100--Sobic010G013000 Sobic005G206000 Sobic005G206000 Sobic004G003100--Sobic005G206000 Sobic004G308500 Sobic004G308500 Sobic004G003100--Sobic004G308500 Sobic009G095800 Sobic009G095800 Sobic004G003100--Sobic009G095800 Sobic001G301000 Sobic001G301000 Sobic004G003100--Sobic001G301000 Sobic007G186500 Sobic007G186500 Sobic004G003100--Sobic007G186500 Sobic005G202300 Sobic005G202300 Sobic003G280000--Sobic005G202300 Sobic003G353200 Sobic003G353200 Sobic003G280000--Sobic003G353200 Sobic006G106900 Sobic006G106900 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic010G031700 Sobic010G031700 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic003G280000--Sobic001G218400 Sobic001G232200--Sobic005G166700 Sobic001G487800 Sobic001G487800 Sobic001G232200--Sobic001G487800 Sobic010G267200 Sobic010G267200 Sobic001G232200--Sobic010G267200 Sobic009G150500 Sobic009G150500 Sobic001G232200--Sobic009G150500 Sobic005G224300 Sobic005G224300 Sobic001G232200--Sobic005G224300 Sobic001G232200--Sobic005G202300 Sobic001G232200--Sobic003G353200 Sobic001G232200--Sobic003G280000 Sobic002G228800 Sobic002G228800 Sobic001G232200--Sobic002G228800 Sobic002G028632--Sobic002G366200 Sobic002G028632--Sobic003G357700 Sobic002G028632--Sobic003G443700 Sobic002G028632--Sobic007G177400 Sobic002G028632--Sobic005G216400 Sobic004G346300 Sobic004G346300 Sobic002G028632--Sobic004G346300 Sobic002G028632--Sobic002G025500 Sobic002G028632--Sobic007G064500 Sobic002G178101 Sobic002G178101 Sobic002G028632--Sobic002G178101 Sobic006G097900 Sobic006G097900 Sobic001G218400--Sobic006G097900 Sobic004G121600 Sobic004G121600 Sobic001G218400--Sobic004G121600 Sobic001G181600 Sobic001G181600 Sobic001G218400--Sobic001G181600 Sobic003G441800 Sobic003G441800 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic003G154500 Sobic003G154500 Sobic001G218400--Sobic003G154500 Sobic003G441700 Sobic003G441700 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic001G218400--Sobic005G119900 Sobic008G164450 Sobic008G164450 Sobic001G246700--Sobic008G164450 Sobic006G133200 Sobic006G133200 Sobic001G246700--Sobic006G133200 Sobic001G246700--Sobic003G353200 Sobic001G246700--Sobic001G301000 Sobic001G246700--Sobic003G280000 Sobic007G037600 Sobic007G037600 Sobic001G246700--Sobic007G037600 Sobic001G014700 Sobic001G014700 Sobic001G246700--Sobic001G014700 Sobic001G246700--Sobic005G206000 Sobic004G164300 Sobic004G164300 Sobic001G246700--Sobic004G164300 Sobic002G025500--Sobic003G443700 Sobic002G025500--Sobic004G346300 Sobic002G025500--Sobic003G357700 Sobic010G268700 Sobic010G268700 Sobic002G025500--Sobic010G268700 Sobic002G025500--Sobic002G366200 Sobic005G060200 Sobic005G060200 Sobic002G025500--Sobic005G060200 Sobic002G025500--Sobic005G216400 Sobic002G025500--Sobic007G177400 Sobic007G111800 Sobic007G111800 Sobic002G025500--Sobic007G111800 Sobic005G166700--Sobic001G232200 Sobic007G008600 Sobic007G008600 Sobic005G166700--Sobic007G008600 Sobic005G166700--Sobic009G150500 Sobic005G166700--Sobic003G280000 Sobic005G166700--Sobic006G106900 Sobic005G166700--Sobic003G353200 Sobic006G103300 Sobic006G103300 Sobic005G166700--Sobic006G103300 Sobic005G166700--Sobic003G257400 Sobic005G166700--Sobic005G202300
Octagon: transcription factors


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