Gene annotation
| Transcriptome id | Sobic.002G185600.1 |
|---|---|
| Synonym | Sb02g023370, UNE2 |
| Functional annotation | transporter, putative, expressed |
| UniProt | C5XBC4 |
| Pfam | PF00083 |
| Panther DB | PTHR23505 PTHR23505:SF11 |
| NCBI CDD | KOG1330; Sugar transporter/spinster transmembrane protein |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT5G10190 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g20490.1 : transporter, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046726 , Zm00025a046734 , Zm00025a046735 , Zm00025a046731 , Zm00025a046733 , Zm00025a046728 |
| Brachypodium | KQJ90042 , PNT64471 , PNT64470 , KQJ90038 , KQJ90039 |
| Barley | HORVU1Hr1G083330.4 , HORVU1Hr1G083330.5 , HORVU1Hr1G083330.6 , HORVU1Hr1G083330.7 , HORVU1Hr1G083330.1 , HORVU1Hr1G083330.8 , HORVU5Hr1G058070.4 , HORVU5Hr1G058070.2 , HORVU5Hr1G058070.1 , HORVU5Hr1G058020.4 , HORVU5Hr1G058020.5 , HORVU5Hr1G058020.6 , HORVU5Hr1G058020.7 , HORVU5Hr1G058020.1 , HORVU5Hr1G058020.2 , HORVU5Hr1G058020.3 , HORVU5Hr1G058060.1 , HORVU5Hr1G058060.3 , HORVU5Hr1G058060.4 , HORVU5Hr1G058060.5 |
| Wheat | TraesCS5A02G189400 , TraesCS1D02G382400 , TraesCS1B02G395400 , TraesCS5B02G193800 , TraesCS5D02G201600 , TraesCS5B02G193700 , TraesCS5D02G201500 , TraesCS5B02G194100 , TraesCS5D02G201400 , TraesCS1A02G375200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G170300 | beta,beta-carotene 9,10-dioxygenase, putative, expressed | K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase |
| 2 | Sobic.002G195600 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 3 | Sobic.004G312200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed | - |
| 4 | Sobic.007G073000 | - | - |
| 5 | Sobic.005G046801 | - | - |
| 6 | Sobic.008G138900 | MLA12, putative, expressed | - |
| 7 | Sobic.006G229100 | receptor-like kinase, putative, expressed | - |
| 8 | Sobic.004G322000 | hypro1, putative, expressed | - |
| 9 | Sobic.005G067300 | 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 10 | Sobic.008G191400 | expressed protein | - |
| 11 | Sobic.001G503000 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 12 | Sobic.007G135100 | - | - |
| 13 | Sobic.006G196400 | U-box, putative, expressed | - |
| 14 | Sobic.005G177400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 15 | Sobic.007G090472 | - | - |
| 16 | Sobic.003G203600 | aldehyde dehydrogenase, putative, expressed | K12355: coniferyl-aldehyde dehydrogenase |
| 17 | Sobic.010G082000 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 18 | Sobic.003G322100 | polyphenol oxidase, putative, expressed | K00422: polyphenol oxidase |
| 19 | Sobic.005G115300 | expressed protein | - |
| 20 | Sobic.006G135300 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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