Gene annotation
Transcriptome id Sobic.002G237900.1
Synonym ATCSLE1, Sb02g027570, CSLE1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CSLE6 - cellulose synthase-like family E, expressed
UniProt C5X357
Pfam PF03552
Panther DB PTHR13301 PTHR13301:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016760; cellulose synthase (UDP-forming) activity GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G55850 : cellulose synthase like E1
RAP-DB (Rice) LOC_Os09g30130.1 : CSLE6 - cellulose synthase-like family E, expressed
MaizeGDB (Corn) Zm00025a047380
Brachypodium KQJ90650 , KQJ90647 , KQJ90646
Barley HORVU5Hr1G071140.6 , HORVU5Hr1G071140.7 , HORVU5Hr1G071140.4 , HORVU5Hr1G071140.5 , HORVU5Hr1G071140.2 , HORVU5Hr1G071140.3 , HORVU5Hr1G071140.1 , HORVU5Hr1G071080.7 , HORVU5Hr1G071080.6 , HORVU5Hr1G071080.5 , HORVU5Hr1G071080.4 , HORVU5Hr1G071080.2 , HORVU5Hr1G071080.1 , HORVU5Hr1G071080.8
Wheat TraesCS5A02G253100 , TraesCS5B02G252000 , TraesCS5D02G260900 , TraesCS5D02G260800 , TraesCS5D02G260800 , TraesCS5D02G260800 , TraesCS5D02G260800 , TraesCS5D02G261000 , TraesCS6D02G111900 , TraesCS5B02G251900 , TraesCS5B02G251900 , TraesCS5B02G252100 , TraesCS5A02G253200
Populus -


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cDNA sequences
Sobic.002G237900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G408100 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
2 Sobic.009G140000 MLO domain containing protein, putative, expressed K08472: mlo protein
3 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
4 Sobic.007G141380 - -
5 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.003G426700 expressed protein -
7 Sobic.004G027600 expressed protein -
8 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
9 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
10 Sobic.010G157300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
12 Sobic.002G193800 transporter family protein, putative, expressed -
13 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
14 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
15 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
16 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
17 Sobic.002G022100 OsFBX212 - F-box domain containing protein, expressed -
18 Sobic.004G230700 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
19 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
20 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -


Gene co-expression network
sample Sobic002G237900 Sobic002G237900 Sobic002G408100 Sobic002G408100 Sobic002G237900--Sobic002G408100 Sobic009G140000 Sobic009G140000 Sobic002G237900--Sobic009G140000 Sobic002G403600 Sobic002G403600 Sobic002G237900--Sobic002G403600 Sobic007G141380 Sobic007G141380 Sobic002G237900--Sobic007G141380 Sobic001G531500 Sobic001G531500 Sobic002G237900--Sobic001G531500 Sobic003G426700 Sobic003G426700 Sobic002G237900--Sobic003G426700 Sobic004G027600 Sobic004G027600 Sobic002G237900--Sobic004G027600 Sobic004G317500 Sobic004G317500 Sobic002G237900--Sobic004G317500 Sobic004G189800 Sobic004G189800 Sobic002G237900--Sobic004G189800 Sobic002G408100--Sobic002G237900 Sobic002G408100--Sobic009G140000 Sobic010G019000 Sobic010G019000 Sobic002G408100--Sobic010G019000 Sobic002G408100--Sobic001G531500 Sobic010G157300 Sobic010G157300 Sobic002G408100--Sobic010G157300 Sobic002G408100--Sobic003G426700 Sobic003G342100 Sobic003G342100 Sobic002G408100--Sobic003G342100 Sobic009G123900 Sobic009G123900 Sobic002G408100--Sobic009G123900 Sobic002G408100--Sobic002G403600 Sobic006G260800 Sobic006G260800 Sobic009G140000--Sobic006G260800 Sobic005G001700 Sobic005G001700 Sobic009G140000--Sobic005G001700 Sobic006G055000 Sobic006G055000 Sobic009G140000--Sobic006G055000 Sobic009G062400 Sobic009G062400 Sobic009G140000--Sobic009G062400 Sobic001G517700 Sobic001G517700 Sobic009G140000--Sobic001G517700 Sobic009G140000--Sobic002G403600 Sobic009G140000--Sobic009G123900 Sobic008G052900 Sobic008G052900 Sobic009G140000--Sobic008G052900 Sobic009G219100 Sobic009G219100 Sobic009G140000--Sobic009G219100 Sobic002G403600--Sobic001G531500 Sobic002G403600--Sobic004G027600 Sobic006G064100 Sobic006G064100 Sobic002G403600--Sobic006G064100 Sobic001G073900 Sobic001G073900 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic002G403600--Sobic003G036200 Sobic006G120500 Sobic006G120500 Sobic002G403600--Sobic006G120500 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700 Sobic004G230700 Sobic004G230700 Sobic007G141380--Sobic004G230700 Sobic007G198400 Sobic007G198400 Sobic007G141380--Sobic007G198400 Sobic002G022100 Sobic002G022100 Sobic007G141380--Sobic002G022100 Sobic009G260350 Sobic009G260350 Sobic007G141380--Sobic009G260350 Sobic007G141380--Sobic002G237900 Sobic008G105366 Sobic008G105366 Sobic007G141380--Sobic008G105366 Sobic007G141380--Sobic002G408100 Sobic005G219300 Sobic005G219300 Sobic007G141380--Sobic005G219300 Sobic006G072601 Sobic006G072601 Sobic007G141380--Sobic006G072601 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic001G531500--Sobic002G403600 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic001G531500--Sobic009G123900 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic002G049600 Sobic002G049600 Sobic003G426700--Sobic002G049600 Sobic003G426700--Sobic003G342100 Sobic001G062900 Sobic001G062900 Sobic003G426700--Sobic001G062900 Sobic001G105200 Sobic001G105200 Sobic003G426700--Sobic001G105200 Sobic003G426700--Sobic006G064100 Sobic003G426700--Sobic001G073900 Sobic008G033200 Sobic008G033200 Sobic003G426700--Sobic008G033200 Sobic003G426700--Sobic010G205100 Sobic002G232200 Sobic002G232200 Sobic003G426700--Sobic002G232200 Sobic004G027600--Sobic004G189800 Sobic003G185900 Sobic003G185900 Sobic004G027600--Sobic003G185900 Sobic004G027600--Sobic010G251700 Sobic004G112100 Sobic004G112100 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic010G085100 Sobic010G085100 Sobic004G027600--Sobic010G085100 Sobic001G258200 Sobic001G258200 Sobic004G027600--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic004G027600--Sobic005G101200 Sobic004G317500--Sobic006G120500 Sobic004G317500--Sobic010G251700 Sobic004G317500--Sobic006G064100 Sobic004G317500--Sobic004G027600 Sobic008G047000 Sobic008G047000 Sobic004G317500--Sobic008G047000 Sobic002G324500 Sobic002G324500 Sobic004G317500--Sobic002G324500 Sobic004G317500--Sobic002G403600 Sobic004G317500--Sobic004G112100 Sobic002G404800 Sobic002G404800 Sobic004G317500--Sobic002G404800 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G189800--Sobic004G027600 Sobic009G256100 Sobic009G256100 Sobic004G189800--Sobic009G256100 Sobic004G189800--Sobic003G185900 Sobic005G068700 Sobic005G068700 Sobic004G189800--Sobic005G068700 Sobic004G189800--Sobic002G404800 Sobic002G382700 Sobic002G382700 Sobic004G189800--Sobic002G382700 Sobic008G033000 Sobic008G033000 Sobic004G189800--Sobic008G033000
Octagon: transcription factors


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