Gene annotation
Transcriptome id Sobic.010G157300.1
Synonym Sb10g020990
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z3Z8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34400.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050946
Brachypodium KQJ95808
Barley HORVU6Hr1G017180.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G408100 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
2 Sobic.009G242100 chloroplast unusual positioning protein, putative, expressed -
3 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G426700 expressed protein -
5 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
6 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.001G540300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G237900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLE6 - cellulose synthase-like family E, expressed -
9 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
10 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
11 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
12 Sobic.010G254300 Myb-like DNA-binding domain containing protein, putative, expressed -
13 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
14 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
15 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
16 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
17 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
18 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
19 Sobic.005G206500 sodium/calcium exchanger protein, putative, expressed K03452: magnesium/proton exchanger
20 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic010G157300 Sobic010G157300 Sobic002G408100 Sobic002G408100 Sobic010G157300--Sobic002G408100 Sobic009G242100 Sobic009G242100 Sobic010G157300--Sobic009G242100 Sobic002G049600 Sobic002G049600 Sobic010G157300--Sobic002G049600 Sobic003G426700 Sobic003G426700 Sobic010G157300--Sobic003G426700 Sobic003G342100 Sobic003G342100 Sobic010G157300--Sobic003G342100 Sobic002G390100 Sobic002G390100 Sobic010G157300--Sobic002G390100 Sobic001G540300 Sobic001G540300 Sobic010G157300--Sobic001G540300 Sobic002G237900 Sobic002G237900 Sobic010G157300--Sobic002G237900 Sobic003G036200 Sobic003G036200 Sobic010G157300--Sobic003G036200 Sobic002G408100--Sobic002G237900 Sobic009G140000 Sobic009G140000 Sobic002G408100--Sobic009G140000 Sobic010G019000 Sobic010G019000 Sobic002G408100--Sobic010G019000 Sobic001G531500 Sobic001G531500 Sobic002G408100--Sobic001G531500 Sobic002G408100--Sobic010G157300 Sobic002G408100--Sobic003G426700 Sobic002G408100--Sobic003G342100 Sobic009G123900 Sobic009G123900 Sobic002G408100--Sobic009G123900 Sobic002G403600 Sobic002G403600 Sobic002G408100--Sobic002G403600 Sobic008G117000 Sobic008G117000 Sobic009G242100--Sobic008G117000 Sobic009G242100--Sobic003G036200 Sobic009G242100--Sobic003G342100 Sobic001G073900 Sobic001G073900 Sobic009G242100--Sobic001G073900 Sobic009G242100--Sobic002G049600 Sobic007G105500 Sobic007G105500 Sobic009G242100--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic009G242100--Sobic003G332700 Sobic001G134100 Sobic001G134100 Sobic009G242100--Sobic001G134100 Sobic010G255300 Sobic010G255300 Sobic009G242100--Sobic010G255300 Sobic002G049600--Sobic001G073900 Sobic008G033200 Sobic008G033200 Sobic002G049600--Sobic008G033200 Sobic002G049600--Sobic008G117000 Sobic002G049600--Sobic003G036200 Sobic002G049600--Sobic003G332700 Sobic002G049600--Sobic003G426700 Sobic001G261408 Sobic001G261408 Sobic002G049600--Sobic001G261408 Sobic002G049600--Sobic009G242100 Sobic002G049600--Sobic003G342100 Sobic003G426700--Sobic002G049600 Sobic003G426700--Sobic003G342100 Sobic001G062900 Sobic001G062900 Sobic003G426700--Sobic001G062900 Sobic001G105200 Sobic001G105200 Sobic003G426700--Sobic001G105200 Sobic006G064100 Sobic006G064100 Sobic003G426700--Sobic006G064100 Sobic003G426700--Sobic001G073900 Sobic003G426700--Sobic008G033200 Sobic010G205100 Sobic010G205100 Sobic003G426700--Sobic010G205100 Sobic002G232200 Sobic002G232200 Sobic003G426700--Sobic002G232200 Sobic003G342100--Sobic001G073900 Sobic003G342100--Sobic001G062900 Sobic003G342100--Sobic003G332700 Sobic003G342100--Sobic009G242100 Sobic005G045000 Sobic005G045000 Sobic003G342100--Sobic005G045000 Sobic003G342100--Sobic003G426700 Sobic003G342100--Sobic001G531500 Sobic003G342100--Sobic006G064100 Sobic003G342100--Sobic002G049600 Sobic002G390100--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic002G390100--Sobic002G404800 Sobic009G256100 Sobic009G256100 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic004G215800 Sobic004G215800 Sobic002G390100--Sobic004G215800 Sobic002G390100--Sobic007G105500 Sobic003G042900 Sobic003G042900 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic002G390100--Sobic001G073300 Sobic009G048900 Sobic009G048900 Sobic001G540300--Sobic009G048900 Sobic008G140200 Sobic008G140200 Sobic001G540300--Sobic008G140200 Sobic004G112100 Sobic004G112100 Sobic001G540300--Sobic004G112100 Sobic001G540300--Sobic010G104800 Sobic001G446100 Sobic001G446100 Sobic001G540300--Sobic001G446100 Sobic001G540300--Sobic009G256100 Sobic001G540300--Sobic001G073300 Sobic001G540300--Sobic004G215800 Sobic010G039500 Sobic010G039500 Sobic001G540300--Sobic010G039500 Sobic002G237900--Sobic002G408100 Sobic002G237900--Sobic009G140000 Sobic002G237900--Sobic002G403600 Sobic007G141380 Sobic007G141380 Sobic002G237900--Sobic007G141380 Sobic002G237900--Sobic001G531500 Sobic002G237900--Sobic003G426700 Sobic004G027600 Sobic004G027600 Sobic002G237900--Sobic004G027600 Sobic004G317500 Sobic004G317500 Sobic002G237900--Sobic004G317500 Sobic004G189800 Sobic004G189800 Sobic002G237900--Sobic004G189800 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic003G036200--Sobic009G256100 Sobic003G036200--Sobic008G033200
Octagon: transcription factors


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