Gene annotation
Transcriptome id Sobic.002G270900.1
Synonym HD-GL2-1, Sb02g030470, HDG1, OUTER CELL LAYER3, SbOCL3
Functional annotation Expressed in several layers of cells in the chalaza adjacent to the nucellar epidermis (PubMedID : 25081518)
homeobox and START domains containing protein, putative, expressed
UniProt D6R1L3 , C5X640
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF288
NCBI CDD KOG0483; Transcription factor HEX, contains HOX and HALZ domains
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT4G00730 : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
RAP-DB (Rice) LOC_Os09g35760.2 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047725
Brachypodium KQJ95130 , KQJ95129 , KQJ95128 , KQJ91131
Barley HORVU5Hr1G080700.8 , HORVU5Hr1G080700.9 , HORVU5Hr1G080700.1 , HORVU5Hr1G080700.2 , HORVU5Hr1G080700.3 , HORVU5Hr1G080700.4 , HORVU5Hr1G080700.5 , HORVU5Hr1G080700.6 , HORVU5Hr1G080700.7 , HORVU3Hr1G108430.2 , HORVU3Hr1G108430.1 , HORVU5Hr1G080700.12 , HORVU5Hr1G080700.13 , HORVU5Hr1G080700.10 , HORVU5Hr1G080700.11 , HORVU5Hr1G080700.16 , HORVU5Hr1G080700.17 , HORVU5Hr1G080700.14 , HORVU5Hr1G080700.15 , HORVU0Hr1G013510.1 , HORVU4Hr1G062510.4 , HORVU4Hr1G062510.5 , HORVU4Hr1G062510.2 , HORVU4Hr1G062510.3
Wheat TraesCS5B02G315100 , TraesCS5B02G315100 , TraesCS5A02G314400 , TraesCS5A02G314400 , TraesCS7A02G308400 , TraesCS7D02G305200 , TraesCS7D02G305200 , TraesCS5D02G320600 , TraesCS7B02G208600
Populus -


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cDNA sequences
Sobic.002G270900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G100400 TOO MANY MOUTHS precursor, putative, expressed -
2 Sobic.002G358100 expressed protein -
3 Sobic.001G135600 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.005G055400 amidase family protein, putative, expressed -
5 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
6 Sobic.007G107200 ankyrin repeat family protein, putative, expressed -
7 Sobic.004G041700 expressed protein -
8 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
9 Sobic.001G511800 expressed protein -
10 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
11 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
12 Sobic.007G032100 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
13 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
14 Sobic.007G188400 expressed protein -
15 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.007G065300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
17 Sobic.010G077700 ZOS6-02 - C2H2 zinc finger protein, expressed -
18 Sobic.009G141300 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
20 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G270900 Sobic002G270900 Sobic003G100400 Sobic003G100400 Sobic002G270900--Sobic003G100400 Sobic002G358100 Sobic002G358100 Sobic002G270900--Sobic002G358100 Sobic001G135600 Sobic001G135600 Sobic002G270900--Sobic001G135600 Sobic005G055400 Sobic005G055400 Sobic002G270900--Sobic005G055400 Sobic001G434100 Sobic001G434100 Sobic002G270900--Sobic001G434100 Sobic007G107200 Sobic007G107200 Sobic002G270900--Sobic007G107200 Sobic004G041700 Sobic004G041700 Sobic002G270900--Sobic004G041700 Sobic010G078700 Sobic010G078700 Sobic002G270900--Sobic010G078700 Sobic001G511800 Sobic001G511800 Sobic002G270900--Sobic001G511800 Sobic003G100400--Sobic001G135600 Sobic010G020600 Sobic010G020600 Sobic003G100400--Sobic010G020600 Sobic001G075700 Sobic001G075700 Sobic003G100400--Sobic001G075700 Sobic004G302700 Sobic004G302700 Sobic003G100400--Sobic004G302700 Sobic008G042200 Sobic008G042200 Sobic003G100400--Sobic008G042200 Sobic009G141300 Sobic009G141300 Sobic003G100400--Sobic009G141300 Sobic003G366000 Sobic003G366000 Sobic003G100400--Sobic003G366000 Sobic001G381100 Sobic001G381100 Sobic003G100400--Sobic001G381100 Sobic006G110850 Sobic006G110850 Sobic003G100400--Sobic006G110850 Sobic002G358100--Sobic002G270900 Sobic007G144000 Sobic007G144000 Sobic002G358100--Sobic007G144000 Sobic004G102200 Sobic004G102200 Sobic002G358100--Sobic004G102200 Sobic009G070500 Sobic009G070500 Sobic002G358100--Sobic009G070500 Sobic007G165800 Sobic007G165800 Sobic002G358100--Sobic007G165800 Sobic009G185900 Sobic009G185900 Sobic002G358100--Sobic009G185900 Sobic003G298700 Sobic003G298700 Sobic002G358100--Sobic003G298700 Sobic002G358100--Sobic001G434100 Sobic001G540200 Sobic001G540200 Sobic002G358100--Sobic001G540200 Sobic001G135600--Sobic009G141300 Sobic001G135600--Sobic004G302700 Sobic004G211700 Sobic004G211700 Sobic001G135600--Sobic004G211700 Sobic003G089300 Sobic003G089300 Sobic001G135600--Sobic003G089300 Sobic007G211200 Sobic007G211200 Sobic001G135600--Sobic007G211200 Sobic001G046400 Sobic001G046400 Sobic001G135600--Sobic001G046400 Sobic001G286700 Sobic001G286700 Sobic001G135600--Sobic001G286700 Sobic002G011000 Sobic002G011000 Sobic001G135600--Sobic002G011000 Sobic009G254500 Sobic009G254500 Sobic001G135600--Sobic009G254500 Sobic005G055400--Sobic004G041700 Sobic007G076100 Sobic007G076100 Sobic005G055400--Sobic007G076100 Sobic005G218000 Sobic005G218000 Sobic005G055400--Sobic005G218000 Sobic003G178500 Sobic003G178500 Sobic005G055400--Sobic003G178500 Sobic004G318800 Sobic004G318800 Sobic005G055400--Sobic004G318800 Sobic002G312200 Sobic002G312200 Sobic005G055400--Sobic002G312200 Sobic003G120600 Sobic003G120600 Sobic005G055400--Sobic003G120600 Sobic004G342000 Sobic004G342000 Sobic005G055400--Sobic004G342000 Sobic001G341700 Sobic001G341700 Sobic005G055400--Sobic001G341700 Sobic001G434100--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic001G434100--Sobic004G274600 Sobic001G434100--Sobic001G286700 Sobic003G027100 Sobic003G027100 Sobic001G434100--Sobic003G027100 Sobic001G199400 Sobic001G199400 Sobic001G434100--Sobic001G199400 Sobic001G470200 Sobic001G470200 Sobic001G434100--Sobic001G470200 Sobic007G032100 Sobic007G032100 Sobic001G434100--Sobic007G032100 Sobic010G235300 Sobic010G235300 Sobic001G434100--Sobic010G235300 Sobic004G357000 Sobic004G357000 Sobic001G434100--Sobic004G357000 Sobic001G307450 Sobic001G307450 Sobic007G107200--Sobic001G307450 Sobic007G188400 Sobic007G188400 Sobic007G107200--Sobic007G188400 Sobic007G107200--Sobic001G511800 Sobic005G163450 Sobic005G163450 Sobic007G107200--Sobic005G163450 Sobic003G399166 Sobic003G399166 Sobic007G107200--Sobic003G399166 Sobic008G072050 Sobic008G072050 Sobic007G107200--Sobic008G072050 Sobic007G107200--Sobic002G270900 Sobic007G147000 Sobic007G147000 Sobic007G107200--Sobic007G147000 Sobic004G338400 Sobic004G338400 Sobic007G107200--Sobic004G338400 Sobic005G054800 Sobic005G054800 Sobic004G041700--Sobic005G054800 Sobic006G137000 Sobic006G137000 Sobic004G041700--Sobic006G137000 Sobic007G029900 Sobic007G029900 Sobic004G041700--Sobic007G029900 Sobic002G165500 Sobic002G165500 Sobic004G041700--Sobic002G165500 Sobic005G010600 Sobic005G010600 Sobic004G041700--Sobic005G010600 Sobic007G180700 Sobic007G180700 Sobic004G041700--Sobic007G180700 Sobic006G098300 Sobic006G098300 Sobic004G041700--Sobic006G098300 Sobic006G267400 Sobic006G267400 Sobic004G041700--Sobic006G267400 Sobic003G004900 Sobic003G004900 Sobic004G041700--Sobic003G004900 Sobic003G113500 Sobic003G113500 Sobic010G078700--Sobic003G113500 Sobic010G078700--Sobic001G199400 Sobic010G078700--Sobic007G165800 Sobic006G058000 Sobic006G058000 Sobic010G078700--Sobic006G058000 Sobic010G078700--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic010G078700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic010G078700--Sobic004G248100 Sobic010G078700--Sobic004G274600 Sobic010G078700--Sobic001G470200 Sobic001G511800--Sobic007G188400 Sobic008G176200 Sobic008G176200 Sobic001G511800--Sobic008G176200 Sobic006G097100 Sobic006G097100 Sobic001G511800--Sobic006G097100 Sobic001G511800--Sobic004G041700 Sobic001G320300 Sobic001G320300 Sobic001G511800--Sobic001G320300 Sobic001G215000 Sobic001G215000 Sobic001G511800--Sobic001G215000 Sobic001G511800--Sobic005G054800 Sobic001G511800--Sobic005G010600 Sobic001G511800--Sobic006G137000
Octagon: transcription factors


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