Gene annotation
| Transcriptome id | Sobic.002G285600.1 |
|---|---|
| Synonym | SbSAUR23, Sb02g031800, small auxin up RNA |
| Functional annotation | "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123) OsSAUR45 - Auxin-responsive SAUR gene family member, expressed |
| UniProt | C5X716 |
| Pfam | PF02519 |
| Panther DB | PTHR31175 PTHR31175:SF6 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT1G29500 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os09g37400.1 : OsSAUR45 - Auxin-responsive SAUR gene family member, expressed |
| MaizeGDB (Corn) | Zm00025a047989 |
| Brachypodium | - |
| Barley | HORVU5Hr1G017100.1 , HORVU5Hr1G086320.4 , HORVU5Hr1G086320.1 , HORVU5Hr1G086320.2 , HORVU5Hr1G086320.3 , HORVU5Hr1G086320.10 , HORVU5Hr1G017220.1 |
| Wheat | TraesCS5D02G349100 , TraesCS5B02G346100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G226450 | - | - |
| 2 | Sobic.009G172000 | FAR1 family protein, expressed | - |
| 3 | Sobic.001G250200 | glycerol-3-phosphate acyltransferase, putative, expressed | - |
| 4 | Sobic.005G164966 | - | K13963: serpin B |
| 5 | Sobic.003G264300 | - | - |
| 6 | Sobic.010G083550 | - | - |
| 7 | Sobic.006G014400 | pectate lyase precursor, putative, expressed | K01728: pectate lyase |
| 8 | Sobic.009G099150 | - | - |
| 9 | Sobic.006G211900 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 10 | Sobic.001G103800 | lecithin cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 11 | Sobic.010G231600 | cytochrome P450, putative, expressed | - |
| 12 | Sobic.003G085200 | expressed protein | - |
| 13 | Sobic.001G286400 | - | - |
| 14 | Sobic.001G199632 | - | - |
| 15 | Sobic.007G107950 | - | - |
| 16 | Sobic.006G223001 | - | - |
| 17 | Sobic.005G020800 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 18 | Sobic.010G077000 | "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed | - |
| 19 | Sobic.003G134201 | - | - |
| 20 | Sobic.005G230500 | SCARECROW, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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