Gene annotation
Transcriptome id Sobic.002G292500.1
Synonym Sb02g032360
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
ubiquitin fusion protein, putative, expressed
UniProt C5X7R5
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a005173 , Zm00025a042947 , Zm00025a014723 , Zm00025a014535 , Zm00025a050018 , Zm00025a001458 , Zm00025a048116 , Zm00025a036147 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQK06725 , KQK04203 , PNT77709 , PNT77708 , KQK04197 , KQK17095 , KQJ97255 , KQK04204 , KQK22710 , KQJ89932 , KQK16153
Barley HORVU7Hr1G102840.10 , HORVU4Hr1G001170.5 , HORVU4Hr1G065100.3 , HORVU2Hr1G104390.9 , HORVU4Hr1G065100.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G029050.1 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU7Hr1G029070.1 , HORVU7Hr1G102840.1 , HORVU2Hr1G104440.8 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU4Hr1G065100.2 , HORVU4Hr1G001170.4 , HORVU3Hr1G014180.1 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.3 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU7Hr1G029100.1 , HORVU7Hr1G029100.2 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.1 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU2Hr1G104390.11 , HORVU2Hr1G104390.10 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.4 , HORVU6Hr1G029050.5 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU7Hr1G029150.3
Wheat TraesCS7D02G443100 , TraesCS2B02G107600 , TraesCS7D02G474200 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS4D02G006900 , TraesCS2D02G459100 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS7B02G366700 , TraesCS4B02G233100 , TraesCS2D02G458600 , TraesCS4B02G233100 , TraesCS4A02G086400 , TraesCS2B02G107800 , TraesCS4D02G218400 , TraesCS4B02G218100 , TraesCS1B02G241200 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS7B02G354200 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS5D02G269800 , TraesCS2D02G459200 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS1A02G227100 , TraesCS2A02G458800 , TraesCS2D02G580700 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS7A02G453500 , TraesCSU02G019400 , TraesCS7D02G494400 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS4B02G218000 , TraesCS2A02G458100 , TraesCS4A02G306500 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT39174 , PNT39175 , PNT39172 , PNT39170 , PNT39171 , PNT11513 , PNT39173


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G035200 profilin domain containing protein, expressed -
2 Sobic.003G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
3 Sobic.010G055200 - -
4 Sobic.002G259900 expressed protein -
5 Sobic.002G037700 expressed protein K10891: fanconi anemia group D2 protein
6 Sobic.008G016400 - -
7 Sobic.008G141700 heparanase-like protein precursor, putative, expressed K07964: heparanase
8 Sobic.003G374400 chloride channel protein, putative, expressed K05016: chloride channel 7
9 Sobic.004G295900 cell division cycle protein 23, putative, expressed K03355: APC8, anaphase-promoting complex subunit 8
10 Sobic.003G315000 homeobox-leucine zipper protein ATHB-54, putative, expressed -
11 Sobic.003G039100 expressed protein -
12 Sobic.002G051500 expressed protein -
13 Sobic.008G037600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
14 Sobic.009G149600 transmembrane protein 18, putative, expressed -
15 Sobic.001G334400 protein kinase, putative, expressed -
16 Sobic.002G244901 - -
17 Sobic.009G051600 OsPDIL2-1 protein disulfide isomerase PDIL2-1, expressed K09584: PDIA6, protein disulfide-isomerase A6
18 Sobic.010G249600 macrophage migration inhibitory factor, putative, expressed -
19 Sobic.001G424650 - -
20 Sobic.003G443601 - -


Gene co-expression network
sample Sobic002G292500 Sobic002G292500 Sobic003G035200 Sobic003G035200 Sobic002G292500--Sobic003G035200 Sobic003G297400 Sobic003G297400 Sobic002G292500--Sobic003G297400 Sobic010G055200 Sobic010G055200 Sobic002G292500--Sobic010G055200 Sobic002G259900 Sobic002G259900 Sobic002G292500--Sobic002G259900 Sobic002G037700 Sobic002G037700 Sobic002G292500--Sobic002G037700 Sobic008G016400 Sobic008G016400 Sobic002G292500--Sobic008G016400 Sobic008G141700 Sobic008G141700 Sobic002G292500--Sobic008G141700 Sobic003G374400 Sobic003G374400 Sobic002G292500--Sobic003G374400 Sobic004G295900 Sobic004G295900 Sobic002G292500--Sobic004G295900 Sobic001G494350 Sobic001G494350 Sobic003G035200--Sobic001G494350 Sobic002G051500 Sobic002G051500 Sobic003G035200--Sobic002G051500 Sobic007G185000 Sobic007G185000 Sobic003G035200--Sobic007G185000 Sobic009G240300 Sobic009G240300 Sobic003G035200--Sobic009G240300 Sobic005G068400 Sobic005G068400 Sobic003G035200--Sobic005G068400 Sobic007G226000 Sobic007G226000 Sobic003G035200--Sobic007G226000 Sobic003G308900 Sobic003G308900 Sobic003G035200--Sobic003G308900 Sobic003G364550 Sobic003G364550 Sobic003G035200--Sobic003G364550 Sobic007G072200 Sobic007G072200 Sobic003G035200--Sobic007G072200 Sobic010G003000 Sobic010G003000 Sobic003G297400--Sobic010G003000 Sobic003G297400--Sobic002G292500 Sobic004G348500 Sobic004G348500 Sobic003G297400--Sobic004G348500 Sobic003G039100 Sobic003G039100 Sobic003G297400--Sobic003G039100 Sobic001G096700 Sobic001G096700 Sobic003G297400--Sobic001G096700 Sobic002G266400 Sobic002G266400 Sobic003G297400--Sobic002G266400 Sobic006G236900 Sobic006G236900 Sobic003G297400--Sobic006G236900 Sobic008G165800 Sobic008G165800 Sobic003G297400--Sobic008G165800 Sobic006G078200 Sobic006G078200 Sobic003G297400--Sobic006G078200 Sobic008G131651 Sobic008G131651 Sobic010G055200--Sobic008G131651 Sobic002G108000 Sobic002G108000 Sobic010G055200--Sobic002G108000 Sobic004G312900 Sobic004G312900 Sobic010G055200--Sobic004G312900 Sobic007G119101 Sobic007G119101 Sobic010G055200--Sobic007G119101 Sobic003G315600 Sobic003G315600 Sobic010G055200--Sobic003G315600 Sobic007G090439 Sobic007G090439 Sobic010G055200--Sobic007G090439 Sobic002G125500 Sobic002G125500 Sobic010G055200--Sobic002G125500 Sobic004G240700 Sobic004G240700 Sobic010G055200--Sobic004G240700 Sobic006G130900 Sobic006G130900 Sobic010G055200--Sobic006G130900 Sobic003G278633 Sobic003G278633 Sobic002G259900--Sobic003G278633 Sobic003G443601 Sobic003G443601 Sobic002G259900--Sobic003G443601 Sobic002G259900--Sobic008G016400 Sobic009G216200 Sobic009G216200 Sobic002G259900--Sobic009G216200 Sobic006G118150 Sobic006G118150 Sobic002G259900--Sobic006G118150 Sobic002G259900--Sobic008G141700 Sobic007G138200 Sobic007G138200 Sobic002G259900--Sobic007G138200 Sobic006G151100 Sobic006G151100 Sobic002G259900--Sobic006G151100 Sobic007G224700 Sobic007G224700 Sobic002G259900--Sobic007G224700 Sobic003G234300 Sobic003G234300 Sobic002G037700--Sobic003G234300 Sobic008G016800 Sobic008G016800 Sobic002G037700--Sobic008G016800 Sobic004G007200 Sobic004G007200 Sobic002G037700--Sobic004G007200 Sobic005G110553 Sobic005G110553 Sobic002G037700--Sobic005G110553 Sobic010G242000 Sobic010G242000 Sobic002G037700--Sobic010G242000 Sobic008G159800 Sobic008G159800 Sobic002G037700--Sobic008G159800 Sobic002G197400 Sobic002G197400 Sobic002G037700--Sobic002G197400 Sobic002G037700--Sobic007G226000 Sobic001G367900 Sobic001G367900 Sobic002G037700--Sobic001G367900 Sobic001G424650 Sobic001G424650 Sobic008G016400--Sobic001G424650 Sobic007G077466 Sobic007G077466 Sobic008G016400--Sobic007G077466 Sobic008G016400--Sobic006G118150 Sobic009G183650 Sobic009G183650 Sobic008G016400--Sobic009G183650 Sobic001G212900 Sobic001G212900 Sobic008G016400--Sobic001G212900 Sobic009G149600 Sobic009G149600 Sobic008G016400--Sobic009G149600 Sobic001G334400 Sobic001G334400 Sobic008G016400--Sobic001G334400 Sobic004G224000 Sobic004G224000 Sobic008G016400--Sobic004G224000 Sobic001G492400 Sobic001G492400 Sobic008G016400--Sobic001G492400 Sobic008G141700--Sobic003G443601 Sobic003G069601 Sobic003G069601 Sobic008G141700--Sobic003G069601 Sobic009G088300 Sobic009G088300 Sobic008G141700--Sobic009G088300 Sobic008G141700--Sobic001G334400 Sobic008G141700--Sobic001G424650 Sobic006G255200 Sobic006G255200 Sobic008G141700--Sobic006G255200 Sobic010G129100 Sobic010G129100 Sobic008G141700--Sobic010G129100 Sobic008G141700--Sobic001G212900 Sobic004G127600 Sobic004G127600 Sobic008G141700--Sobic004G127600 Sobic002G174100 Sobic002G174100 Sobic003G374400--Sobic002G174100 Sobic003G374400--Sobic007G090439 Sobic002G303900 Sobic002G303900 Sobic003G374400--Sobic002G303900 Sobic002G176900 Sobic002G176900 Sobic003G374400--Sobic002G176900 Sobic001G536200 Sobic001G536200 Sobic003G374400--Sobic001G536200 Sobic006G218100 Sobic006G218100 Sobic003G374400--Sobic006G218100 Sobic001G003400 Sobic001G003400 Sobic003G374400--Sobic001G003400 Sobic001G332400 Sobic001G332400 Sobic003G374400--Sobic001G332400 Sobic004G323500 Sobic004G323500 Sobic003G374400--Sobic004G323500 Sobic004G295900--Sobic005G068400 Sobic006G088450 Sobic006G088450 Sobic004G295900--Sobic006G088450 Sobic010G249600 Sobic010G249600 Sobic004G295900--Sobic010G249600 Sobic004G295900--Sobic007G226000 Sobic004G295900--Sobic009G149600 Sobic002G288500 Sobic002G288500 Sobic004G295900--Sobic002G288500 Sobic005G135300 Sobic005G135300 Sobic004G295900--Sobic005G135300 Sobic001G033800 Sobic001G033800 Sobic004G295900--Sobic001G033800 Sobic004G295900--Sobic007G185000
Octagon: transcription factors


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