Gene annotation
Transcriptome id Sobic.002G318300.1
Synonym Sb02g034720
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5XA09
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF143
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os07g33310.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017375 , Zm00025a017379 , Zm00025a017378 , Zm00025a014789 , Zm00025a014788 , Zm00025a048219 , Zm00025a007083 , Zm00025a034230
Brachypodium PNT75013 , PNT75015 , PNT75014 , KQK15995 , KQK15996
Barley HORVU2Hr1G046420.8 , HORVU2Hr1G046420.9 , HORVU2Hr1G046420.4 , HORVU2Hr1G046420.5 , HORVU2Hr1G046420.6 , HORVU2Hr1G046420.7 , HORVU2Hr1G046420.1 , HORVU2Hr1G046420.2 , HORVU2Hr1G046420.16 , HORVU2Hr1G046420.17 , HORVU2Hr1G046420.14 , HORVU2Hr1G046420.15 , HORVU2Hr1G046420.12 , HORVU2Hr1G046420.13 , HORVU2Hr1G046420.10 , HORVU2Hr1G046420.11
Wheat TraesCS5D02G332300 , TraesCS2A02G222300 , TraesCSU02G124400 , TraesCSU02G124400 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS3A02G499200 , TraesCS5A02G326300 , TraesCS5A02G553200 , TraesCS7D02G272900 , TraesCS5A02G326300 , TraesCS3D02G506100 , TraesCS3D02G506100 , TraesCS7A02G272800 , TraesCS2D02G228200 , TraesCS2D02G228200 , TraesCS3B02G563700 , TraesCS2B02G247700 , TraesCS2B02G247700 , TraesCS4B02G388800 , TraesCS3B02G485100 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS5B02G326600 , TraesCS7B02G170800 , TraesCS3A02G499200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G161500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
2 Sobic.010G131400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
3 Sobic.010G180100 transferase family protein, putative, expressed -
4 Sobic.006G140100 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
5 Sobic.004G159100 exostosin family domain containing protein, expressed -
6 Sobic.003G082800 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
7 Sobic.002G254900 membrane protein, putative, expressed -
8 Sobic.003G040600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.002G374650 -(PubMedID : 26976818) K11517: (S)-2-hydroxy-acid oxidase
10 Sobic.008G043500 harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.002G271300 NC domain-containing protein, putative, expressed -
12 Sobic.002G081700 RGH1A, putative, expressed -
13 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
14 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
15 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
16 Sobic.001G070300 expressed protein -
17 Sobic.003G135400 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
18 Sobic.004G274800 protein transport protein-related, putative, expressed -
19 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
20 Sobic.003G345200 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G318300 Sobic002G318300 Sobic003G161500 Sobic003G161500 Sobic002G318300--Sobic003G161500 Sobic010G131400 Sobic010G131400 Sobic002G318300--Sobic010G131400 Sobic010G180100 Sobic010G180100 Sobic002G318300--Sobic010G180100 Sobic006G140100 Sobic006G140100 Sobic002G318300--Sobic006G140100 Sobic004G159100 Sobic004G159100 Sobic002G318300--Sobic004G159100 Sobic003G082800 Sobic003G082800 Sobic002G318300--Sobic003G082800 Sobic002G254900 Sobic002G254900 Sobic002G318300--Sobic002G254900 Sobic003G040600 Sobic003G040600 Sobic002G318300--Sobic003G040600 Sobic002G374650 Sobic002G374650 Sobic002G318300--Sobic002G374650 Sobic004G274800 Sobic004G274800 Sobic003G161500--Sobic004G274800 Sobic009G206500 Sobic009G206500 Sobic003G161500--Sobic009G206500 Sobic006G281400 Sobic006G281400 Sobic003G161500--Sobic006G281400 Sobic003G161500--Sobic002G318300 Sobic003G052100 Sobic003G052100 Sobic003G161500--Sobic003G052100 Sobic008G032800 Sobic008G032800 Sobic003G161500--Sobic008G032800 Sobic007G139500 Sobic007G139500 Sobic003G161500--Sobic007G139500 Sobic006G109500 Sobic006G109500 Sobic003G161500--Sobic006G109500 Sobic003G369200 Sobic003G369200 Sobic003G161500--Sobic003G369200 Sobic010G131400--Sobic010G180100 Sobic010G131400--Sobic002G254900 Sobic001G360700 Sobic001G360700 Sobic010G131400--Sobic001G360700 Sobic001G002800 Sobic001G002800 Sobic010G131400--Sobic001G002800 Sobic002G167600 Sobic002G167600 Sobic010G131400--Sobic002G167600 Sobic006G180300 Sobic006G180300 Sobic010G131400--Sobic006G180300 Sobic002G271300 Sobic002G271300 Sobic010G131400--Sobic002G271300 Sobic008G141200 Sobic008G141200 Sobic010G131400--Sobic008G141200 Sobic001G406700 Sobic001G406700 Sobic010G131400--Sobic001G406700 Sobic010G180100--Sobic010G131400 Sobic010G180100--Sobic002G254900 Sobic010G180100--Sobic002G167600 Sobic010G180100--Sobic001G360700 Sobic010G180100--Sobic001G002800 Sobic001G224300 Sobic001G224300 Sobic010G180100--Sobic001G224300 Sobic001G409100 Sobic001G409100 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic010G180100--Sobic003G387500 Sobic007G152900 Sobic007G152900 Sobic006G140100--Sobic007G152900 Sobic010G054600 Sobic010G054600 Sobic006G140100--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic006G140100--Sobic006G116500 Sobic001G070300 Sobic001G070300 Sobic006G140100--Sobic001G070300 Sobic004G197400 Sobic004G197400 Sobic006G140100--Sobic004G197400 Sobic004G355500 Sobic004G355500 Sobic006G140100--Sobic004G355500 Sobic001G142000 Sobic001G142000 Sobic006G140100--Sobic001G142000 Sobic009G214100 Sobic009G214100 Sobic006G140100--Sobic009G214100 Sobic002G280700 Sobic002G280700 Sobic006G140100--Sobic002G280700 Sobic002G384000 Sobic002G384000 Sobic004G159100--Sobic002G384000 Sobic001G452200 Sobic001G452200 Sobic004G159100--Sobic001G452200 Sobic002G107400 Sobic002G107400 Sobic004G159100--Sobic002G107400 Sobic010G170300 Sobic010G170300 Sobic004G159100--Sobic010G170300 Sobic008G043500 Sobic008G043500 Sobic004G159100--Sobic008G043500 Sobic004G159100--Sobic010G180100 Sobic004G159100--Sobic002G374650 Sobic003G015200 Sobic003G015200 Sobic004G159100--Sobic003G015200 Sobic001G026300 Sobic001G026300 Sobic004G159100--Sobic001G026300 Sobic001G506600 Sobic001G506600 Sobic003G082800--Sobic001G506600 Sobic001G503000 Sobic001G503000 Sobic003G082800--Sobic001G503000 Sobic007G073000 Sobic007G073000 Sobic003G082800--Sobic007G073000 Sobic005G177400 Sobic005G177400 Sobic003G082800--Sobic005G177400 Sobic003G322100 Sobic003G322100 Sobic003G082800--Sobic003G322100 Sobic010G096700 Sobic010G096700 Sobic003G082800--Sobic010G096700 Sobic004G322000 Sobic004G322000 Sobic003G082800--Sobic004G322000 Sobic003G140200 Sobic003G140200 Sobic003G082800--Sobic003G140200 Sobic006G085700 Sobic006G085700 Sobic003G082800--Sobic006G085700 Sobic002G254900--Sobic001G002800 Sobic002G254900--Sobic010G096700 Sobic002G254900--Sobic010G180100 Sobic002G254900--Sobic004G047600 Sobic002G254900--Sobic001G360700 Sobic002G254900--Sobic001G503000 Sobic002G254900--Sobic001G506600 Sobic007G090472 Sobic007G090472 Sobic002G254900--Sobic007G090472 Sobic002G254900--Sobic002G167600 Sobic009G073800 Sobic009G073800 Sobic003G040600--Sobic009G073800 Sobic006G183900 Sobic006G183900 Sobic003G040600--Sobic006G183900 Sobic003G083200 Sobic003G083200 Sobic003G040600--Sobic003G083200 Sobic006G282300 Sobic006G282300 Sobic003G040600--Sobic006G282300 Sobic008G034700 Sobic008G034700 Sobic003G040600--Sobic008G034700 Sobic002G318200 Sobic002G318200 Sobic003G040600--Sobic002G318200 Sobic001G212451 Sobic001G212451 Sobic003G040600--Sobic001G212451 Sobic004G248500 Sobic004G248500 Sobic003G040600--Sobic004G248500 Sobic003G415400 Sobic003G415400 Sobic003G040600--Sobic003G415400 Sobic002G374650--Sobic008G034700 Sobic004G112200 Sobic004G112200 Sobic002G374650--Sobic004G112200 Sobic002G374650--Sobic001G026300 Sobic005G041300 Sobic005G041300 Sobic002G374650--Sobic005G041300 Sobic002G374650--Sobic006G183900 Sobic003G324600 Sobic003G324600 Sobic002G374650--Sobic003G324600 Sobic006G205500 Sobic006G205500 Sobic002G374650--Sobic006G205500 Sobic010G155100 Sobic010G155100 Sobic002G374650--Sobic010G155100 Sobic002G374650--Sobic010G170300
Octagon: transcription factors


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